Select the most conserved/variable regions across the HIV genome
The scatter plots describe a sliding window analysis (30 nt windows with 1 nt of overlap)
of the following measures of sequence conservation for each
multiple sequence alignment used the database:
-PIS: percentage of identical sites
-PPI: percentage of pairwise identity
Select the alignment to display in the graph below:
Define below a window to see on the multiple sequence alignment:
or use a window midpoint (roll over a dot on the graph) to visualize the corresponding section of the alignment
Click and drag on the graphs to zoom in
List of the most conserved genomic regions considering the PIS (30 nt windows):
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List of the most conserved genomic regions considering the PPI (30 nt windows):
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