HIV1ID0001 |
PCR primer pair |
Nested PCR |
PCR primer forward |
A1352 |
23 |
95 |
GRAACCCACTGCTTAASSCTCAA |
506-528 | 5'LTR |
GGAACCCACUGCUUAAGCCUCAA |
1 |
HIV1ID0002 |
PCR primer pair |
Nested PCR |
PCR primer reverse |
A1355 |
23 |
|
GAGGGATCTCTAGNYACCAGAGT |
578-600 | 5'LTR |
ACUCUGGUAACUAGAGAUCCCUC |
1 |
HIV1ID0003 |
PCR primer pair |
Nested PCR |
PCR primer forward |
A1354 |
21 |
125 |
CTCAATAAAGCTTGCCTTGAG |
524-544 | 5'LTR |
CUCAAUAAAGCUUGCCUUGAG |
1 |
HIV1ID0004 |
PCR primer pair |
Nested PCR |
PCR primer reverse |
A1353 |
23 |
|
TGTTCGGGCGCCACTGCTAGAGA |
626-648 | 5'LTR |
UCUCUAGCAGUGGCGCCCGAACA |
1 |
HIV1ID0005 |
PCR primer pair |
SYBR Green real time PCR |
PCR primer reverse |
SK431 |
27 |
142 |
TGCTATGTCAGTTCCCCTTGGTTCTCT |
1474-1500 | gag |
AGAGAACCAAGGGGAAGUGACAUAGCA |
2; 3; 4; 5; 6; 7; |
HIV1ID0006 |
PCR primer pair |
SYBR Green real time PCR |
PCR primer forward |
SK462 |
30 |
|
AGTTGGAGGACATCAAGCAGCCATGCAAAT |
1359-1388 | gag |
AGUGGGGGGACAUCAAGCAGCCAUGCAAAU |
2; 3; 4; 5; 6; 7; |
HIV1ID0007 |
Probe |
PCR |
Probe |
SK102 |
33 |
|
GAGACCATCAATGAGGAAGCTGCAGAATGG(...) |
1396-1428 | gag |
GAGACCAUCAAUGAGGAAGCUGCAGAAUGG(...) |
2; 3; 7; |
HIV1ID0008 |
Probe |
PCR |
Probe |
CO3 |
40 |
|
TGAGTTGCAACAGATGCTGTTGCGCCTCAA(...) |
7890-7929 | env |
CUGAGGGCUAUUGAGGCGCAACAGCAUCUG(...) |
8 |
HIV1ID0009 |
PCR primer pair |
Multiplex-RT PCR & ELISA |
PCR primer forward |
F2 |
23 |
189 |
CAGAAGGAGCCACCCCACAAGAT |
1316-1338 | gag |
CAGAAGGAGCCACCCCACAAGAU |
9 |
HIV1ID0010 |
PCR primer pair |
Multiplex-RT PCR & ELISA |
PCR primer reverse |
R2 |
25 |
|
TTCCTGCTATGTCACTTCCCCTTGG |
1480-1504 | gag |
CCAAGGGGAAGUGACAUAGCAGGAA |
10 |
HIV1ID0011 |
Probe |
Multiplex-RT PCR & ELISA |
Probe |
ziv |
22 |
|
CTTGGTTCTCTCATYTGGCCTG |
1463-1484 | gag |
CAGGCCAGAUGAGAGAACCAAG |
11 |
HIV1ID0012 |
PCR primer pair |
Multiplex real-time PCR & mole(...) |
PCR primer forward |
|
18 |
151 |
GTACAGTGCAGGGGAAAG |
4808-4825 | pol |
GUACAGUGCAGGGGAAAG |
12 |
HIV1ID0013 |
PCR primer pair |
Multiplex real-time PCR & mole(...) |
PCR primer reverse |
|
20 |
|
CCAGAGTAGTTTTGCTGGTC |
4939-4958 | pol |
GACCAGCAAAGCUCCUCUGG |
12 |
HIV1ID0014 |
Probe |
Multiplex real-time PCR & mole(...) |
Probe (molecular beacons) |
|
32 |
|
CCCGTGGTTTATTACAGGGACAGCAGAACG(...) |
4901-4923 | pol |
GGUUUAUUACAGGGACAGCAGAA |
12 |
HIV1ID0015 |
PCR primer pair |
Multiplex-RT PCR & ELISA |
PCR primer forward |
SK100 |
19 |
291 |
ATCAAGCAGCCATGCAAAT |
1370-1388 | gag |
AUCAAGCAGCCAUGCAAAU |
13 |
HIV1ID0016 |
PCR primer pair |
Multiplex-RT PCR & ELISA |
PCR primer reverse |
SK104 |
22 |
|
CTTTTGGTCCTTGTCTTATGTC |
1639-1660 | gag |
GACAUAAGACAAGGACCAAAGG |
13 |
HIV1ID0017 |
Probe |
Multiplex-RT PCR & ELISA |
Probe |
H-1 probe |
23 |
|
AATGAGGAGGCTGCAGAATGGGA |
1405-1427 | gag |
AAUGAGGAAGCUGCAGAAUGGGA |
13 |
HIV1ID0018 |
PCR primer pair |
Multiplex real-time PCR & mole(...) |
PCR primer forward |
SK 38, gagF |
28 |
115 |
ATAATCCACCTATCCCAGTAGGAGAAAT |
1544-1571 | gag |
AUAAUCCACCUAUCCCAGUAGGAGAAAU |
14; 15; 19; 8; |
HIV1ID0019 |
PCR primer pair |
Multiplex real-time PCR & mole(...) |
PCR primer reverse |
gagR |
27 |
|
TTTGGTCCTTGTCTTATGTCCAGAATG |
1632-1658 | gag |
CAUUCUGGACAUAAGACAAGGACCAAA |
14; 19; |
HIV1ID0020 |
Probe |
Multiplex real-time PCR & mole(...) |
Probe (molecular beacons) |
|
45 |
|
GCGAGCCTGGGATTAAATAAAATAGTAAGA(...) |
1591-1623 | gag |
CUGGGAUUAAAUAAAAUAGUAAGAAUGUAU(...) |
14 |
HIV1ID0021 |
PCR primer pair |
Multiplex real-time PCR & Taqm(...) |
PCR primer forward |
LTR-F |
20 |
76 |
TAAAGCTTGCCTTGAGTGCT |
529-548 | 5'LTR |
UAAAGCUUGCCUUGAGUGCU |
16 |
HIV1ID0022 |
PCR primer pair |
Multiplex real-time PCR & Taqm(...) |
PCR primer reverse |
LTR-R2 |
24 |
|
GTCTGAGGGATCTCTAGTTACCAG |
581-604 | 5'LTR |
CUGGUAACUAGAGAUCCCUCAGAC |
16 |
HIV1ID0023 |
Probe |
Multiplex real-time PCR & Taqm(...) |
Probe (Taqman) |
LTR-P |
26 |
|
AGTAGTGTGTGCCCGTCTGTTGTGTG |
552-577 | 5'LTR |
AGUAGUGUGUGCCCGUCUGUUGUGUG |
16 |
HIV1ID0024 |
PCR primer pair |
Nested PCR |
PCR primer forward |
WOI1 |
25 |
333 |
GAGAGATGGGTGCGAGAGCGTCAGT |
785-809 | gag |
GAGAGAUGGGUGCGAGAGCGUCAGU |
17 |
HIV1ID0025 |
PCR primer pair |
Nested PCR |
PCR primer reverse |
WOI2 |
25 |
|
TGTTTTGCTCTTCCTCTATCTTGTC |
1093-1117 | gag |
GACAAGAUAGAGGAAGAGCAAAACA |
17 |
HIV1ID0026 |
PCR primer pair |
Nested PCR |
PCR primer forward |
WII1-2 |
18 |
|
TGCGAGAGCGTCAGTATT |
795-812 | gag |
UGCGAGAGCGUCAGUAUU |
17 |
HIV1ID0027 |
PCR primer pair |
Nested PCR |
PCR primer reverse |
WII2 |
19 |
|
AGGGTTGCTACTGTATTAT |
1025-1043 | gag |
AUAAUACAGUAGCAACCCU |
17 |
HIV1ID0028 |
PCR primer pair |
multiplex real-time PCR & olig(...) |
PCR primer reverse |
HIV_OUT_F |
26 |
284 |
AGAACCGRTCTACATARTCTCTAARG |
1665-1690 | gag |
CUUUAGAGACUAUGUAGACCGGUUCU |
18 |
HIV1ID0029 |
PCR primer pair |
multiplex real-time PCR & olig(...) |
PCR primer forward |
HIV_OUT_R |
21 |
|
TGAGGARGCTGCAGAATGGGA |
1407-1427 | gag |
UGAGGAAGCUGCAGAAUGGGA |
18 |
HIV1ID0030 |
PCR primer pair |
multiplex real-time PCR & olig(...) |
PCR primer reverse |
HIV_IN_F_I |
25 |
181 |
TGGYCCTTGTYTTATGTCCARAATG |
1632-1665 | gag |
CAUUCUGGACAUAAGACAAGGACCAAAGGA(...) |
18 |
HIV1ID0031 |
PCR primer pair |
multiplex real-time PCR & olig(...) |
PCR primer forward |
HIV_IN_R |
23 |
|
AGAACCAAGGGGAAGTGACATAG |
1476-1498 | gag |
AGAACCAAGGGGAAGUGACAUAG |
18 |
HIV1ID0032 |
PCR primer pair |
SYBR Green real time PCR |
PCR primer forward |
NP51 |
26 |
228 |
GCAGCATAGAACAAAAATAGAGGAGC |
3137-3162 | pol |
GCAGCAUAGAACAAAAAUAGAGGAGC |
19 |
HIV1ID0033 |
PCR primer pair |
SYBR Green real time PCR |
PCR primer reverse |
NP52 |
24 |
|
GGGTAAATCTGACTTGCCCAATTC |
3341-3364 | pol |
GAAUUGGGCAAGUCAGAUUUACCC |
19 |
HIV1ID0034 |
PCR primer pair |
SYBR Green real time PCR |
PCR primer forward |
NP170 |
26 |
132 |
GARACCAARAATGATAGGRGGAATTG |
2378-2403 | pol |
GAAACCAAAAAUGAUAGGGGGAAUUG |
19 |
HIV1ID0035 |
PCR primer pair |
SYBR Green real time PCR |
PCR primer reverse |
NP171 |
23 |
|
CCAATTATGTTGACAGGKGTRGG |
2487-2509 | pol |
CCUACACCUGUCAACAUAAUUGG |
19 |
HIV1ID0036 |
PCR primer pair |
SYBR Green real time PCR |
PCR primer forward |
NP175 |
25 |
159 |
GRGAAAGAATARTAGACATAATAGC |
4819-4843 | pol |
GGGAAAGAAUAGUAGACAUAAUAGC |
19 |
HIV1ID0037 |
PCR primer pair |
SYBR Green real time PCR |
PCR primer reverse |
NP174 |
21 |
|
CTACYGCCCCTTYACCTTTCC |
4957-4977 | pol |
GGAAAGGUGAAGGGGCAGUAG |
19 |
HIV1ID0038 |
PCR primer pair |
PCR |
PCR primer forward |
SK 29 |
18 |
105 |
ACTAGGGAACCCACTGCT |
501-518 | 5'LTR |
ACUAGGGAACCCACUGCU |
8 |
HIV1ID0039 |
PCR primer pair |
PCR |
PCR primer reverse |
SK 30 |
17 |
|
GGTCTGAGGGATCTCTA |
589-605 | 5'LTR |
UAGAGAUCCCUCAGACC |
8 |
HIV1ID0040 |
Probe |
PCR |
Probe |
SK 31 |
34 |
|
ACCAGAGTCACACAACAGACGGGCACACAC(...) |
552-585 | 5'LTR |
AGUAGUGUGUGCCCGUCUGUUGUGUGACUC(...) |
8 |
HIV1ID0041 |
PCR primer pair |
PCR |
PCR primer forward |
SK 68 |
20 |
142 |
AGCAGCAGGAAGCACTATGG |
7796-7815 | env |
AGCAGCAGGAAGCACUAUGG |
8 |
HIV1ID0042 |
PCR primer pair |
PCR |
PCR primer reverse |
SK 69 |
21 |
|
CCAGACTGTGAGTTGCAACAG |
7917-7937 | env |
CUGUUGCAACUCACAGUCUGG |
8 |
HIV1ID0043 |
Probe |
PCR |
Probe |
SK 70 |
35 |
|
ACGGTACAGGCCAGACAATTATTGTCTGGT(...) |
7836-7870 | env |
ACGGUACAGGCCAGACAAUUAUUGUCUGGU(...) |
8 |
HIV1ID0044 |
PCR primer pair |
PCR |
PCR primer forward |
CO1 |
20 |
135 |
ACAATTATTGTCTGGTATAG |
7850-7869 | env |
ACAAUUAUUGUCUGGUAUAG |
8 |
HIV1ID0045 |
PCR primer pair |
PCR |
PCR primer reverse |
CO2 |
20 |
|
AGGTATCTTTCCACAGCCAG |
7965-7984 | env |
CUGGCUGUGGAAAGAUACCU |
8 |
HIV1ID0046 |
Primer |
Recombinase Polymerase Amplifi(...) |
Primer forward |
gag F1 |
32 |
|
TCACCTAGAACTTTAAATGCATGGGTAAAA(...) |
1231-1262 | gag |
UCACCUAGAACUUUAAAUGCAUGGGUAAAA(...) |
20 |
HIV1ID0047 |
Primer |
Recombinase Polymerase Amplifi(...) |
Primer forward |
gag F2 |
32 |
|
AATGCATGGGTAAAAGTAGTAGAAGAGAAG(...) |
1246-1277 | gag |
AAUGCAUGGGUAAAAGUAGUAGAAGAGAAG(...) |
20 |
HIV1ID0048 |
Primer |
Recombinase Polymerase Amplifi(...) |
Primer forward |
gag F3 |
32 |
|
AAGGCTTTCAGCCCAGAAGTGATACCCATG(...) |
1273-1304 | gag |
AAGGCUUUCAGCCCAGAAGUGAUACCCAUG(...) |
20 |
HIV1ID0049 |
Primer |
Recombinase Polymerase Amplifi(...) |
Primer reverse |
gag R1 |
32 |
|
TATTTGTTCCTGAAGGGTACTAGTAGTTCC(...) |
1499-1530 | gag |
CAGGAACUACUAGUACCCUUCAGGAACAAA(...) |
20 |
HIV1ID0050 |
Primer |
Recombinase Polymerase Amplifi(...) |
Primer reverse |
gag R2 |
32 |
|
TACTAGTAGTTCCTGCTATGTCACTTCCCC(...) |
1482-1513 | gag |
AAGGGGAAGUGACAUAGCAGGAACUACUAG(...) |
20 |
HIV1ID0051 |
Primer |
Recombinase Polymerase Amplifi(...) |
Primer reverse |
gag R3 |
32 |
|
CCTGCTATGTCACTTCCCCTTGGTTCTCTC(...) |
1471-1502 | gag |
AUGAGAGAACCAAGGGGAAGUGACAUAGCA(...) |
20 |
HIV1ID0052 |
Primer |
Recombinase Polymerase Amplifi(...) |
Primer reverse |
gag R4 |
32 |
|
TTGATGGTCTCTTTTAACATTTGCATGGCT(...) |
1375-1406 | gag |
GCAGCCAUGCAAAUGUUAAAAGAGACCAUC(...) |
20 |
HIV1ID0053 |
Primer |
Recombinase Polymerase Amplifi(...) |
Primer reverse |
gag R44 |
32 |
|
CCCATTCTGCAGCTTCCTCATTGATGGTCT(...) |
1396-1426 | gag |
GAGACCAUCAAUGAGGAAGCUGCAGAAUGG(...) |
20 |
HIV1ID0054 |
Primer |
Recombinase Polymerase Amplifi(...) |
Primer reverse |
gag R45 |
32 |
|
TCATTGATGGTCTCTTTTAACATTTGCATG(...) |
1378-1409 | gag |
GCCAUGCAAAUGUUAAAAGAGACCAUCAAU(...) |
20 |
HIV1ID0055 |
Primer |
Recombinase Polymerase Amplifi(...) |
Primer forward |
LTR F2 |
33 |
|
CATATAAGCAGCTGCTTTTTGCCTGTACTG(...) |
425-457 | LTR |
CAUAUAAGCAGCUGCUUUUUGCCUGUACUG(...) |
20 |
HIV1ID0056 |
Primer |
Recombinase Polymerase Amplifi(...) |
Primer forward |
LTR F3 |
31 |
|
CCTGTACTGGGTCTCTCTGGTTAGACCAGA(...) |
446-476 | LTR |
CCUGUACUGGGUCUCUCUGGUUAGACCAGA(...) |
20 |
HIV1ID0057 |
Primer |
Recombinase Polymerase Amplifi(...) |
Primer forward |
LTR F4 |
34 |
|
CTGGGTCTCTCTGGTTAGACCAGATTTGAG(...) |
452-485 | LTR |
CUGGGUCUCUCUGGUUAGACCAGAUCUGAG(...) |
20 |
HIV1ID0058 |
Primer |
Recombinase Polymerase Amplifi(...) |
Primer forward |
LTR F5 |
33 |
|
TTAGACCAGATTTGAGCCTGGGAGCTCTCT(...) |
466-498 | LTR |
UUAGACCAGAUCUGAGCCUGGGAGCUCUCU(...) |
20 |
HIV1ID0059 |
Primer |
Recombinase Polymerase Amplifi(...) |
Primer forward |
LTR F6 |
32 |
|
CCTGGGAGCTCTCTGGCTAACTAGGGAACC(...) |
482-513 | LTR |
CCUGGGAGCUCUCUGGCUAACUAGGGAACC(...) |
20 |
HIV1ID0060 |
Primer |
Recombinase Polymerase Amplifi(...) |
Primer reverse |
LTR R1 |
30 |
|
CCCTGTTCGGGCGCCACTGCTAGAGATTTT |
622-651 | LTR |
AAAAUCUCUAGCAGUGGCGCCCGAACAGGG |
20 |
HIV1ID0061 |
Primer |
Recombinase Polymerase Amplifi(...) |
Primer reverse |
LTR R2 |
33 |
|
TCTGAGGGATCTCTAGTTACCAGAGTCACA(...) |
571-603 | LTR |
UUGUGUGACUCUGGUAACUAGAGAUCCCUC(...) |
20 |
HIV1ID0062 |
Primer |
Recombinase Polymerase Amplifi(...) |
Primer reverse |
LTR R3 |
32 |
|
ATCTCTAGTTACCAGAGTCACACAACAGAC(...) |
564-595 | LTR |
CCGUCUGUUGUGUGACUCUGGUAACUAGAG(...) |
20 |
HIV1ID0063 |
Primer |
Recombinase Polymerase Amplifi(...) |
Primer reverse |
LTR R4 |
32 |
|
CCAGAGTCACACAACAGACGGGCACACACT(...) |
553-584 | LTR |
GUAGUGUGUGCCCGUCUGUUGUGUGACUCU(...) |
20 |
HIV1ID0064 |
Primer |
Recombinase Polymerase Amplifi(...) |
Primer forward |
pol F1 |
33 |
|
CCCTACAATCCCCAAAGTCAAGGAGTAGTA(...) |
4653-4685 | pol |
CCCUACAAUCCCCAAAGUCAAGGAGUAGUA(...) |
20 |
HIV1ID0065 |
Primer |
Recombinase Polymerase Amplifi(...) |
Primer forward |
pol F2 |
33 |
|
CCCAAAGTCAAGGAGTAGTAGAATCTATGA(...) |
4663-4695 | pol |
CCCAAAGUCAAGGAGUAGUAGAAUCUAUGA(...) |
20 |
HIV1ID0066 |
Primer |
Recombinase Polymerase Amplifi(...) |
Primer forward |
pol F3 |
34 |
|
TAGTAGAATCTATGAATAAAGAATTAAAGA(...) |
4678-4711 | pol |
UAGUAGAAUCUAUGAAUAAAGAAUUAAAGA(...) |
20 |
HIV1ID0067 |
Primer |
Recombinase Polymerase Amplifi(...) |
Primer forward |
pol F4 |
33 |
|
ACAGCAGTACAAATGGCAGTATTCATCCAC(...) |
4749-4781 | pol |
ACAGCAGUACAAAUGGCAGUAUUCAUCCAC(...) |
20 |
HIV1ID0068 |
Primer |
Recombinase Polymerase Amplifi(...) |
Primer forward |
pol F5 |
34 |
|
TGGCAGTATTCATTCACAATTTTAAAAGAA(...) |
4762-4795 | pol |
UGGCAGUAUUCAUCCACAAUUUUAAAAGAA(...) |
20 |
HIV1ID0069 |
Primer |
Recombinase Polymerase Amplifi(...) |
Primer reverse |
pol R1 |
32 |
|
TGTATTACTACTGCCCCTTCACCTTTCCAG(...) |
4953-4984 | pol |
CUCUGGAAAGGUGAAGGGGCAGUAGUAAUA(...) |
20 |
HIV1ID0070 |
Primer |
Recombinase Polymerase Amplifi(...) |
Primer reverse |
pol R2 |
31 |
|
CTGTAATAAACCCGAAAATTTTGAATTTTT(...) |
4882-4912 | pol |
CAAAAAUUCAAAAUUUUCGGGUUUAUUACA(...) |
20 |
HIV1ID0071 |
Primer |
Recombinase Polymerase Amplifi(...) |
Primer reverse |
pol R3 |
34 |
|
CCCGAAAATTTTGAATTTTTGTAATTTGTT(...) |
4869-4902 | pol |
CAAAAACAAAUUACAAAAAUUCAAAAUUUU(...) |
20 |
HIV1ID0072 |
Primer |
Recombinase Polymerase Amplifi(...) |
Primer reverse |
pol R4 |
33 |
|
TAATTCTTTAGTTTGTATGTCTGTTGCTAT(...) |
4836-4868 | pol |
AUAAUAGCAACAGACAUACAAACUAAAGAA(...) |
20 |
HIV1ID0073 |
PCR primer pair |
Taqman real-time quantative PC(...) |
Primer forward |
polP1 |
19 |
199 |
TGGCATGGGTACCAGCACA |
4147-4165 | pol |
UGGCAUGGGUACCAGCACA |
21 |
HIV1ID0074 |
PCR primer pair |
Taqman real-time quantative PC(...) |
Primer reverse |
polP2 |
22 |
|
CTGGCTACTATTTCTTTTGCTA |
4324-4345 | pol |
UAGCAAAAGAAAUAGUAGCCAG |
21 |
HIV1ID0075 |
Probe |
Taqman real-time quantative PC(...) |
Probe |
polprobe |
32 |
|
TTTATCTACTTGTTCATTTCCTCCAATTCC(...) |
4168-4199 | pol |
AAGGAAUUGGAGGAAAUGAACAAGUAGAUA(...) |
21 |
HIV1ID0076 |
PCR primer pair |
Taqman real-time quantative PC(...) |
Primer forward |
gagFW |
25 |
166 |
TTAAGTGTTTCAATTGTGGCAAAGA |
1958-1982 | gag |
UUAAGUGUUUCAAUUGUGGCAAAGA |
21 |
HIV1ID0077 |
PCR primer pair |
Taqman real-time quantative PC(...) |
Primer reverse |
gagRW |
30 |
|
AAAAAATTAGCCTGTCTCTCAGTACAATCT |
2061-2090 | gag |
AGAUUGUACUGAGAGACAGGCUAAUUUUUU |
21 |
HIV1ID0078 |
Probe |
Taqman real-time quantative PC(...) |
Probe |
gagprobe |
27 |
|
CCCTAGGAAAAAGGGCTGTTGGAAATG |
2010-2036 | gag |
CCCUAGGAAAAAGGGCUGUUGGAAAUG |
21 |
HIV1ID0079 |
Sequencing primer |
Sequencing |
Primer forward |
G00 |
19 |
|
GACTAGCGGAGGCTAGAAG |
764-782 | gag |
GACUAGCGGAGGCUAGAAG |
15 |
HIV1ID0080 |
Sequencing primer |
Sequencing |
Primer forward |
G10 |
22 |
|
CAGTATTAAGCGGGGGAGAATT |
806-827 | gag |
CAGUAUUAAGCGGGGGAGAAUU |
15 |
HIV1ID0081 |
Sequencing primer |
Sequencing |
Primer forward |
G20 |
24 |
|
GTATGGGCAAGCAGGGAGCTAGAA |
892-915 | gag |
GUAUGGGCAAGCAGGGAGCUAGAA |
15 |
HIV1ID0082 |
Sequencing primer |
Sequencing |
Primer forward |
G30 |
22 |
|
CAGTAGCAACCCTCTATTGTGT |
1031-1052 | gag |
CAGUAGCAACCCUCUAUUGUGU |
15 |
HIV1ID0083 |
Sequencing primer |
Sequencing |
Primer forward |
G40 |
20 |
|
GACACCAAGGAAGCTTTAGA |
1075-1094 | gag |
GACACCAAGGAAGCUUUAGA |
15 |
HIV1ID0084 |
Sequencing primer |
Sequencing |
Primer forward |
G50 |
18 |
|
CACAGCAAGCAGCAGCTG |
1133-1150 | gag |
CACAGCAAGCAGCAGCUG |
15 |
HIV1ID0085 |
Sequencing primer |
Sequencing |
Primer forward |
G60 |
25 |
|
CAGCCAAAATTACCCTATAGTGCAG |
1173-1197 | gag |
CAGCCAAAAUUACCCUAUAGUGCAG |
15 |
HIV1ID0086 |
Sequencing primer |
Sequencing |
Primer forward |
G70 |
21 |
|
ATGAGGAAGCTGCAGAATGGG |
1406-1426 | gag |
AUGAGGAAGCUGCAGAAUGGG |
15 |
HIV1ID0087 |
Sequencing primer |
Sequencing |
Primer forward |
G80 |
23 |
|
ATGAGAGAACCAAGGGGAAGTGA |
1471-1493 | gag |
AUGAGAGAACCAAGGGGAAGUGA |
15 |
HIV1ID0088 |
Sequencing primer |
Sequencing |
Primer forward |
G100 |
18 |
|
TAGAAGAAATGATGACAG |
1817-1834 | gag |
UAGAAGAAAUGAUGACAG |
15 |
HIV1ID0089 |
Sequencing primer |
Sequencing |
Primer forward |
G110 |
18 |
|
AGGCTAATTTTTTAGGGA |
2078-2095 | gag |
AGGCUAAUUUUUUAGGGA |
15 |
HIV1ID0090 |
Sequencing primer |
Sequencing |
Primer reverse |
G01 |
18 |
|
AGGGGTCGTTGCCAAAGA |
2264-2281 | gag |
UCUUUGGCAACGACCCCU |
15 |
HIV1ID0091 |
Sequencing primer |
Sequencing |
Primer reverse |
G05 |
20 |
|
TGTTGGCTCTGGTCTGCTCT |
2138-2157 | gag |
AGAGCAGACCAGAGCCAACA |
15 |
HIV1ID0092 |
Sequencing primer |
Sequencing |
Primer reverse |
G15 |
22 |
|
CTTTGCCACAATTGAAACACTT |
1960-1981 | gag |
AAGUGUUUCAAUUGUGGCAAAG |
15 |
HIV1ID0093 |
Sequencing primer |
Sequencing |
Primer reverse |
G25 |
23 |
|
ATTGCTTCAGCCAAAACTCTTGC |
1867-1889 | gag |
GCAAGAGUUUUGGCUGAAGCAAU |
15 |
HIV1ID0094 |
Sequencing primer |
Sequencing |
Primer reverse |
G35 |
22 |
|
CATGCTGTCATCATTTCTTCTA |
1817-1838 | gag |
UAGAAGAAAUGAUGACAGCAUG |
15 |
HIV1ID0095 |
Sequencing primer |
Sequencing |
Primer reverse |
G45 |
22 |
|
TTGGACCAACAAGGTTTCTGTC |
1740-1761 | gag |
GACAGAAACCUUGUUGGUCCAA |
15 |
HIV1ID0096 |
Sequencing primer |
Sequencing |
Primer reverse |
G65 |
18 |
|
ATGCTGAAAACATGGGTA |
1295-1312 | gag |
UACCCAUGUUUUCAGCAU |
15 |
HIV1ID0097 |
Sequencing primer |
Sequencing |
Primer reverse |
G85 |
20 |
|
TGCACTATAGGGTAATTTTG |
1177-1196 | gag |
CAAAAUUACCCUAUAGUGCA |
15 |
HIV1ID0098 |
Sequencing primer |
Sequencing |
Primer forward |
E0 |
33 |
|
TAGAGCCCTGGAAGCATCCAGGAAGTCAGC(...) |
5853-5885 | env |
UAGAGCCCUGGAAGCAUCCAGGAAGUCAGC(...) |
15 |
HIV1ID0099 |
Sequencing primer |
Sequencing |
Primer forward |
E00 |
28 |
|
TAGAAAGAGCAGAAGACAGTGGCAATGA |
6201-6228 | env |
UAGAAAGAGCAGAAGACAGUGGCAAUGA |
15 |
HIV1ID0100 |
Sequencing primer |
Sequencing |
Primer forward |
E10 |
26 |
|
TTGTGGGTCACAGTCTATTATGGGGT |
6324-6349 | env |
UUGUGGGUCACAGUCUAUUAUGGGGU |
15 |
HIV1ID0101 |
Sequencing primer |
Sequencing |
Primer forward |
E20 |
27 |
|
GGGCCACACATGCCTGTGTACCCACAG |
6430-6456 | env |
GGGCCACACAUGCCUGUGUACCCACAG |
15 |
HIV1ID0102 |
Sequencing primer |
Sequencing |
Primer forward |
E30 |
27 |
|
GTGTACCCACAGACCCCAGCCCACAAG |
6445-6471 | env |
GUGUACCCACAGACCCCAACCCACAAG |
15 |
HIV1ID0103 |
Sequencing primer |
Sequencing |
Primer forward |
E40 |
27 |
|
CATGTGGAAAAATGACATGGTGGATCA |
6506-6532 | env |
CAUGUGGAAAAAUGACAUGGUAGAACA |
15 |
HIV1ID0104 |
Sequencing primer |
Sequencing |
Primer forward |
E50 |
26 |
|
CATGGTAGAGCAGATGCAGGAGGATG |
6521-6546 | env |
CAUGGUAGAACAGAUGCAUGAGGAUA |
15 |
HIV1ID0105 |
Sequencing primer |
Sequencing |
Primer forward |
E60 |
23 |
|
TAATCAGTTTATGGGATCAAAGC |
6547-6569 | env |
UAAUCAGUUUAUGGGAUCAAAGC |
15 |
HIV1ID0106 |
Sequencing primer |
Sequencing |
Primer forward |
E70 |
27 |
|
GGGATCAAAGCCTAAAGCCATGTGTAA |
6559-6585 | env |
GGGAUCAAAGCCUAAAGCCAUGUGUAA |
15 |
HIV1ID0107 |
Sequencing primer |
Sequencing |
Primer forward |
E80 |
22 |
|
CCAATTCCCATACATTATTGTG |
6858-6879 | env |
CCAAUUCCCAUACAUUAUUGUG |
15 |
HIV1ID0108 |
Sequencing primer |
Sequencing |
Primer forward |
E90 |
24 |
|
CACAGTACAATGTACACATGGAAT |
6953-6976 | env |
CACAGUACAAUGUACACAUGGAAU |
15 |
HIV1ID0109 |
Sequencing primer |
Sequencing |
Primer forward |
E100 |
20 |
|
ACACATGGAATTAAGCCAGT |
6966-6985 | env |
ACACAUGGAAUUAGGCCAGU |
15 |
HIV1ID0110 |
Sequencing primer |
Sequencing |
Primer forward |
E110 |
24 |
|
CTGTTAAATGGCAGTCTAGCAGAA |
7002-7025 | env |
CUGUUAAAUGGCAGUCUAGCAGAA |
15 |
HIV1ID0111 |
Sequencing primer |
Sequencing |
Primer forward |
E120 |
24 |
|
GTAGAAATTAATTGTACAAGACCC |
7098-7121 | env |
GUAGAAAUUAAUUGUACAAGACCC |
15 |
HIV1ID0112 |
Sequencing primer |
Sequencing |
Primer forward |
E130 |
23 |
|
ACAAATTATAAACATGTGGCAGG |
7487-7509 | env |
ACAAAUUAUAAACAUGUGGCAGA |
15 |
HIV1ID0113 |
Sequencing primer |
Sequencing |
Primer forward |
E140 |
24 |
|
GTGAATTATATAAATATAAAGTAG |
7666-7689 | env |
GUGAAUUAUAUAAAUAUAAAGUAG |
15 |
HIV1ID0114 |
Sequencing primer |
Sequencing |
Primer forward |
E160 |
27 |
|
GTGGGAATAGGAGCTGTGTTCCTTGGG |
7761-7787 | env |
GUGGGAAUAGGAGCUUUGUUCCUUGGG |
15 |
HIV1ID0115 |
Sequencing primer |
Sequencing |
Primer forward |
E170 |
18 |
|
AGCAGGAAGCACTATGGG |
7799-7816 | env |
AGCAGGAAGCACUAUGGG |
15 |
HIV1ID0116 |
Sequencing primer |
Sequencing |
Primer forward |
E180 |
20 |
|
GTCTGGTATAGTGCAACAGCA |
7860-7879 | env |
UCUGGUAUAGUGCAGCAGCA |
15 |
HIV1ID0117 |
Sequencing primer |
Sequencing |
Primer forward |
E210 |
24 |
|
TAACAAATTGGCTGTGGTATATAA |
8248-8271 | env |
UAACAAAUUGGCUGUGGUAUAUAA |
15 |
HIV1ID0118 |
Sequencing primer |
Sequencing |
Primer forward |
E260 |
25 |
|
TTCAGCTACCACCGCTTGAGAGACT |
8520-8544 | env |
UUCAGCUACCACCGCUUGAGAGACU |
15 |
HIV1ID0119 |
Sequencing primer |
Sequencing |
Primer forward |
E270 |
20 |
|
GTGGAACTTCTGGGACGCAG |
8568-8587 | env |
GUGGAACUUCUGGGACGCAG |
15 |
HIV1ID0120 |
Sequencing primer |
Sequencing |
Primer reverse |
E01 |
26 |
|
TCCAGTCCCCCCTTTTCTTTTAAAAA |
9064-9089 | env |
UUUUUAAAAGAAAAGGGGGGACUGGA |
15 |
HIV1ID0121 |
Sequencing primer |
Sequencing |
Primer reverse |
E03 |
26 |
|
TAAGTCATTGGTCTTAAAGGTACCTG |
9013-9038 | env |
CAGGUACCUUUAAGACCAAUGACUUA |
15 |
HIV1ID0122 |
Sequencing primer |
Sequencing |
Primer reverse |
E05 |
22 |
|
TATTTGAGGGCTTCCCACCCCC |
8587-8608 | env |
GGGGGUGGGAAGCCCUCAAAUA |
15 |
HIV1ID0123 |
Sequencing primer |
Sequencing |
Primer reverse |
E15 |
22 |
|
CTCTCTCTCCACCTTCTTCTTC |
8424-8445 | env |
GAAGAAGAAGGUGGAGAGAGAG |
15 |
HIV1ID0124 |
Sequencing primer |
Sequencing |
Primer reverse |
E45 |
19 |
|
CCTGCCTAACTCTATTCAC |
8337-8355 | env |
GUGAAUAGAGUUAGGCAGG |
15 |
HIV1ID0125 |
Sequencing primer |
Sequencing |
Primer reverse |
E55 |
27 |
|
GCCCCAGACTGTGAGTTGCAACAGATG |
7914-7940 | env |
CAUCUGUUGCAACUCACAGUCUGGGGC |
15 |
HIV1ID0126 |
Sequencing primer |
Sequencing |
Primer reverse |
E65 |
18 |
|
AGTGCTTCCTGCTGCTCC |
7794-7811 | env |
GGAGCAGCAGGAAGCACU |
15 |
HIV1ID0127 |
Sequencing primer |
Sequencing |
Primer reverse |
E75 |
27 |
|
GCGCCCATAGTGCTTCCTGCTGCTCCC |
7793-7819 | env |
GGGAGCAGCAGGAAGCACUAUGGGCGC |
15 |
HIV1ID0128 |
Sequencing primer |
Sequencing |
Primer reverse |
E85 |
27 |
|
GTCCCTCATATCTCCTCCTCCAGGTCT |
7629-7655 | env |
AGACCUGGAGGAGGAGAUAUGAGGGAC |
15 |
HIV1ID0129 |
Sequencing primer |
Sequencing |
Primer reverse |
E95 |
18 |
|
GATGGGAGGGGCATACAT |
7524-7541 | env |
AUGUAUGCCCCUCCCAUC |
15 |
HIV1ID0130 |
Sequencing primer |
Sequencing |
Primer reverse |
E105 |
21 |
|
GCTTTTCCTACTTCCTGCCAC |
7512-7532 | env |
GUAGGAAAAGCAAUGUAUGCC |
15 |
HIV1ID0131 |
Sequencing primer |
Sequencing |
Primer reverse |
E115 |
24 |
|
AGAAAAATTCCCCTCCACAATTAA |
7351-7374 | env |
UUAAUUGUGGAGGGGAAUUUUUCU |
15 |
HIV1ID0132 |
Sequencing primer |
Sequencing |
Primer reverse |
E125 |
24 |
|
CAATTTCTGGGTCCCCTCCTGAGG |
7315-7338 | env |
CCUCAGGAGGGGACCCAGAAAUUG |
15 |
HIV1ID0133 |
Sequencing primer |
Sequencing |
Primer reverse |
E135 |
28 |
|
AGCTGTACTATTATGGTTTTAGCATTGT |
7060-7087 | env |
ACAAUGCUAAAACCAUAAUAGUACAGCU |
15 |
HIV1ID0134 |
Sequencing primer |
Sequencing |
Primer reverse |
E145 |
24 |
|
CAGCAGTTGAGTTGATACTACTGG |
6981-7004 | env |
CCAGUAGUAUCAACUCAACUGCUG |
15 |
HIV1ID0135 |
Sequencing primer |
Sequencing |
Primer reverse |
E165 |
27 |
|
GGGGTCTGTGGGTACACAGGCATGTGT |
6435-6461 | env |
ACACAUGCCUGUGUACCCACAGACCCC |
15 |
HIV1ID0136 |
Sequencing primer |
Sequencing |
Primer reverse |
E175 |
24 |
|
TTTAGCATCTGATGCACAAAATAG |
6378-6401 | env |
CUAUUUUGUGCAUCAGAUGCUAAA |
15 |
HIV1ID0137 |
Primer |
cDNA synthesis |
Degenerated primer forward |
GAG2FWD |
21 |
|
RGAYATAARRCARGGRCCAAA |
1638-1658 | gag |
GGACAUAAGACAAGGACCAAA |
22 |
HIV1ID0138 |
Primer |
cDNA synthesis |
Degenerated primer reverse |
GAG2REV |
22 |
|
CTTKCCACAYTTCCARCARCCC |
2022-2043 | gag |
GGGCUGUUGGAAAUGUGGAAAG |
22 |
HIV1ID0139 |
Primer |
Nested PCR |
Degenerated primer reverse |
M/Op24-7 |
18 |
|
CCCTGRCAKGCTYCATCA |
1834-1851 | gag |
GCAUGUCAGGGAGUAGGA |
23 |
HIV1ID0140 |
Primer |
Nested PCR |
Degenerated primer forward |
M/Op24-1 |
20 |
|
AGYCAAAATTWYCCYATAGT |
1174-1193 | gag |
AGCCAAAAUUACCCUAUAGU |
23 |
HIV1ID0141 |
Primer |
Nested PCR |
Degenerated primer forward |
M/Op24-2 |
20 |
|
AGRACYTTRAAYGCATGGGT |
1237-1256 | gag |
AGAACUUUAAAUGCAUGGGU |
23 |
HIV1ID0142 |
Primer |
Nested PCR |
Degenerated primer reverse |
M/Op24-6 |
19 |
|
TGTGWAGCTTGYTCRGCTC |
1703-1721 | gag |
GAGCCGAGCAAGCUUCACA |
23 |
HIV1ID0143 |
Primer |
Nested PCR |
Degenerated primer reverse |
M/Op24-4 |
19 |
|
ATKTCTCCYACTGGRAYAG |
1553-1571 | gag |
CUAUCCCAGUAGGAGAAAU |
23 |
HIV1ID0144 |
Primer |
Nested PCR |
Degenerated primer reverse |
JH38 |
20 |
|
GGTGARTATCCCTKCCTAAC |
8346-8365 | env |
GUUAGGCAGGGAUAUUCACC |
23 |
HIV1ID0145 |
Primer |
Nested PCR |
Degenerated primer forward |
JH41 |
19 |
|
CAGCAGGAAGCACUAUGGG |
7798-7816 | env |
CAGCAGGAAGCACUAUGGG |
23 |
HIV1ID0146 |
Primer |
Nested PCR |
Degenerated primer forward |
env27F |
19 |
|
CTGGYATAGTGCARCARCA |
7861-7879 | env |
CUGGUAUAGUGCAGCAGCA |
23 |
HIV1ID0147 |
Primer |
Nested PCR |
Degenerated primer reverse |
menv19R |
22 |
|
AARCCTCCTACTATCATTATRA |
8278-8299 | env |
UCAUAAUGAUAGUAGGAGGCUU |
23 |
HIV1ID0148 |
Primer |
Nested PCR |
Degenerated primer forward |
JH37 |
19 |
|
GTCTGGGGCATYAARCAGC |
7932-7950 | env |
GUCUGGGGCAUCAAGCAGC |
23 |
HIV1ID0149 |
Primer |
Nested PCR |
Degenerated primer forward |
menv17F |
20 |
|
TYAARCAGCTCCAGRCAAGA |
7942-7961 | env |
UCAAGCAGCUCCAGGCAAGA |
23 |
HIV1ID0150 |
Primer |
Nested PCR |
Degenerated primer reverse |
JH42 |
20 |
|
CCAAYTCCACARAYTTKCCC |
8221-8240 | env |
GGGCAAGUUUGUGGAAUUGG |
23 |
HIV1ID0151 |
Probe |
Multiplex real-time PCR & Flow(...) |
|
SK102 |
33 |
|
GAGACCATCAATGAGGAAGCTGCAGAATGG(...) |
1396-1428 | gag |
GAGACCAUCAAUGAGGAAGCUGCAGAAUGG(...) |
7 |
HIV1ID0152 |
Primer pair |
Multiplex real-time PCR & Flow(...) |
|
SK431 |
27 |
|
TGCTATGTCAGTTCCCCTTGGTTCTCT |
1491-1517 | gag |
UGACAUAGCAGGAACUACUAGUACCCU |
7 |
HIV1ID0153 |
Primer pair |
One-step RT-PCR |
Primer forward |
Pan-HIV-1_1F |
17 |
1928 |
AGCCYGGGAGCTCTCTG |
480-496 | LTR |
AGCCUGGGAGCUCUCUG |
24 |
HIV1ID0154 |
Primer pair |
One-step RT-PCR |
Primer reverse |
Pan-HIV-1_1R |
23 |
|
CCTCCAATTCCYCCTATCATTTT |
2385-2407 | pol |
AAAAUGAUAGGGGGAAUUGGAGG |
24 |
HIV1ID0155 |
Primer pair |
One-step RT-PCR |
Primer forward |
Pan-HIV-1_2F |
21 |
3574 |
GGGAAGTGAYATAGCWGGAAC |
1485-1505 | gag |
GGGAAGUGACAUAGCAGGAAC |
24 |
HIV1ID0156 |
Primer pair |
One-step RT-PCR |
Primer reverse |
Pan-HIV-1_2R |
22 |
|
CTGCCATCTGTTTTCCATARTC |
5037-5058 | pol |
GAUUAUGGAAAACAGAUGGCAG |
24 |
HIV1ID0157 |
Primer pair |
One-step RT-PCR |
Primer forward |
Pan-HIV-1_3F |
23 |
3066 |
TTAAAAGAAAAGGGGGGATTGGG |
4783-4805 | pol |
UUAAAAGAAAAGGGGGGAUUGGG |
24 |
HIV1ID0158 |
Primer pair |
One-step RT-PCR |
Primer reverse |
Pan-HIV-1_3R |
18 |
|
TGGCYTGTACCGTCAGCG |
7831-7848 | env |
CGCUGACGGUACAGGCCA |
24 |
HIV1ID0159 |
Primer pair |
One-step RT-PCR |
Primer forward |
Pan-HIV-1_4F |
19 |
3551 |
CCTATGGCAGGAAGAAGCG |
5967-5985 | env |
CCUAUGGCAGGAAGAAGCG |
24 |
HIV1ID0160 |
Primer pair |
One-step RT-PCR |
Primer reverse |
Pan-HIV-1_4R |
21 |
|
CTT WTA TGC AGC WTC TGA GGG |
9497-9517 | LTR |
CCCUCAGAUCCUGCAUAUAAG |
24 |
HIV1ID0161 |
Primer pair |
PCR |
Primer forward |
RU5F |
20 |
170 |
TTAAGCCTCAATAAAGCTTG |
518-537 | LTR |
UUAAGCCUCAAUAAAGCUUG |
25 |
HIV1ID0162 |
Primer pair |
PCR |
Primer reverse |
RU5R |
26 |
|
GCGCCACTGCTAGAGATTTTCCACAC |
616-641 | LTR |
GUGUGGAAAAUCUCUAGCAGUGGCGC |
25 |
HIV1ID0163 |
Primer pair |
PCR |
Primer forward |
intF |
20 |
425 |
CCCTACAATCCCCAAAGTCA |
4653-4672 | pol |
CCCUACAAUCCCCAAAGUCA |
25 |
HIV1ID0164 |
Primer pair |
PCR |
Primer reverse |
intR |
20 |
|
CTTGCCACACAATCATCACC |
5058-5077 | pol |
GGUGAUGAUUGUGUGGCAAG |
25 |
HIV1ID0165 |
Primer pair |
PCR |
Primer forward |
tatF |
20 |
118 |
GAAGCATCCAGGAAGTCAGC |
5863-5882 | env |
GAAGCAUCCAGGAAGUCAGC |
25 |
HIV1ID0166 |
Primer pair |
PCR |
Primer reverse |
tatR |
20 |
|
CTTCCTGCCATAGGAGATGC |
5961-5980 | env |
GCAUCUCCUAUGGCAGGAAG |
25 |
HIV1ID0167 |
Primer pair |
PCR |
Primer forward |
vprF |
19 |
162 |
AACAAGCCCCAGAAGACCA |
5563-5581 | env |
AACAAGCCCCAGAAGACCA |
25 |
HIV1ID0168 |
Primer pair |
PCR |
Primer reverse |
vprR |
19 |
|
CTGCCCAAGTATCCCCATA |
5706-5724 | env |
UAUGGGGAUACUUGGGCAG |
25 |
HIV1ID0169 |
Primer |
Real-time PCR |
Primer reverse |
B3 |
21 |
|
CCTACATACAAATCATCCATG |
3098-3118 | pol |
CAUGGAUGAUUUGUAUGUAGG |
26 |
HIV1ID0170 |
Primer |
Real-time PCR |
Primer reverse |
F3 |
21 |
|
AGTTCCCTTAGATAAAGACTT |
2900-2920 | pol |
AGUUCCCUUAGAUGAAGACUU |
26 |
HIV1ID0171 |
Primer |
Recombinase Polymerase Amplifi(...) |
Primer reverse |
GAGR1 |
20 |
|
TTATTGTGACGAGGGGTCGC |
2273-2292 | gag |
ACGACCCCUCGUCACAAUAA |
27 |
HIV1ID0172 |
Primer pair |
Real-time PCR |
Primer forward |
5' Repliprimer |
20 |
263 |
CCAGGAAGATGGAAACCAAA |
2367-2386 | pol |
CCAGGAAGAUGGAAACCAAA |
28 |
HIV1ID0173 |
Primer pair |
Real-time PCR |
Primer reverse |
3' Repliprimer |
20 |
|
GTCAATGGCCATTGTTTAAC |
2610-2629 | pol |
GUUAAACAAUGGCCAUUGAC |
28 |
HIV1ID0174 |
Probe |
Real-time PCR |
Probe |
Repliprobe |
24 |
|
TGTCTTACTTTGATAAAACCTCC |
2403-2426 | pol |
GGAGGUUUUAUCAAAGUAAGACAG |
28 |
HIV1ID0175 |
Primer |
PCR |
Primer forward |
AV1O |
30 |
|
TGTGACTCTGGTAACTAGAGATCCCTCAGA |
574-603 | LTR |
UGUGACUCUGGUAACUAGAGAUCCCUCAGA |
29 |
HIV1ID0176 |
Primer |
PCR |
Primer forward |
AV11 |
15 |
|
TCTAGCAGTGGCGCC |
628-642 | LTR |
UCUAGCAGUGGCGCC |
29 |
HIV1ID0177 |
Primer |
PCR |
Primer reverse |
AV12 |
15 |
|
GACGCTCTCGCACCC |
792-806 | gag |
GGGUGCGAGAGCGUC |
29 |
HIV1ID0178 |
Primer |
PCR |
Primer reverse |
AV13 |
29 |
|
GGCAAGCAGGGAGCTAGAACGATTCGCAG |
897-925 | gag |
GGCAAGCAGGGAGCUAGAACGAUUCGCAG |
29 |
HIV1ID0179 |
Primer |
Nested PCR |
Primer forward |
HPOL4235 |
23 |
|
CCCTACAATCCCCAAAGTCAAGG |
4653-4675 | pol |
CCCUACAAUCCCCAAAGUCAAGG |
30 |
HIV1ID0180 |
Primer |
Nested PCR |
Primer reverse |
HPOL4538 |
22 |
|
TACTGCCCCTTCACCTTTCCA |
4956-4976 | pol |
UGGAAAGGUGAAGGGGCAGUA |
30 |
HIV1ID0181 |
Primer |
Nested PCR |
Primer forward |
HPOL4327 |
23 |
|
TAAGACAGCAGTACAAATGGCAG |
4745-4767 | pol |
UAAGACAGCAGUACAAAUGGCAG |
30 |
HIV1ID0182 |
Primer |
Nested PCR |
Primer reverse |
HPOL4481 |
21 |
|
GCTGTCCCTGTAATAAACCCG |
4899-4919 | pol |
CGGGUUUAUUACAGGGACAGC |
30 |
HIV1ID0183 |
Primer |
Nested PCR |
Primer forward |
HENV5944 |
26 |
|
GCAACCACCACTCTCTATTTTGTGC |
6366-6391 | env |
GCAACCACCACUCUAUUUUGUGCAUC |
30 |
HIV1ID0184 |
Primer |
Nested PCR |
Primer reverse |
HENV6154 |
25 |
|
AGAGTGGGGTTAATTTTACACATGG |
6576-6600 | env |
CCAUGUGUAAAAUUAACCCCACUCU |
30 |
HIV1ID0185 |
Primer |
Nested PCR |
Primer forward |
HENV6009 |
20 |
|
GGCCACACATGCCTGTGTAC |
6431-6450 | env |
GGCCACACAUGCCUGUGUAC |
30 |
HIV1ID0186 |
Primer |
Nested PCR |
Primer reverse |
HENV6135 |
21 |
|
GGCTTTAGGCTTTGATCCCAT |
6557-6577 | env |
AUGGGAUCAAAGCCUAAAGCC |
30 |
HIV1ID0187 |
Primer |
Nested PCR |
Primer forward |
AV18 |
30 |
|
GCACCCACCAAGGCAAAGAGAAGAGTGGTG |
7713-7742 | env |
GCACCCACCAAGGCAAAGAGAAGAGUGGUG |
29 |
HIV1ID0188 |
Primer |
Nested PCR |
Primer forward |
AV19 |
16 |
|
AGGAAGCACTATGGGC |
7802-7817 | env |
AGGAAGCACUAUGGGC |
29 |
HIV1ID0189 |
Primer |
Nested PCR |
Primer reverse |
AV20 |
16 |
|
GCTGCTTGATGCCCCA |
7935-7950 | env |
UGGGGCAUCAAGCAGC |
29 |
HIV1ID0190 |
Primer |
Nested PCR |
Primer reverse |
AV21 |
27 |
|
TCCACAGCCAGGACTCTTGCCTGGAGCTG |
7949-7975 | env |
GCUCCAGGCAAGAAUCCUGGCUGUGGA |
29 |
HIV1ID0191 |
Primer pair |
RT-LAMP |
Primer forward |
p24F3 |
19 |
225 |
ATTATCAGAAGGAGCCACC |
1311-1329 | gag |
AUUAUCAGAAGGAGCCACC |
31 |
HIV1ID0192 |
Primer pair |
RT-LAMP |
Primer reverse |
p24B3 |
21 |
|
CATCCTATTTGTTCCTGAAGG |
1515-1535 | gag |
CCUUCAGGAACAAAUAGGAUG |
31 |
HIV1ID0193 |
Primer pair |
RT-LAMP |
Primer forward |
p24LoopF |
25 |
124 |
TTTAACATTTGCATGGCTGCTTGAT |
1370-1394 | gag |
AUCAAGCAGCCAUGCAAAUGUUAAA |
31 |
HIV1ID0194 |
Primer pair |
RT-LAMP |
Primer reverse |
p24LoopR |
19 |
|
GAGATCCAAGGGGAAGTGA |
1475-1493 | gag |
GAGAACCAAGGGGAAGUGA |
31 |
HIV1ID0195 |
Primer pair |
RT-LAMP |
Primer forward |
proteaseF3 |
18 |
211 |
AAAGATAGGGGGGCAACT |
2291-2308 | gag |
AAAGAUAGGGGGGCAACU |
31 |
HIV1ID0196 |
Primer pair |
RT-LAMP |
Primer reverse |
proteaseB3 |
20 |
|
GTTGACAGGTGTAGGTCCTA |
2482-2501 | gag |
UAGGACCUACACCUGUCAAC |
31 |
HIV1ID0197 |
Primer pair |
RT-LAMP |
Primer forward |
proteaseLoopF |
22 |
95 |
TATTTCTTCTAATACTGTATCA |
2334-2355 | gag |
GCAGAUGAUACAGUAUUAGAAG |
31 |
HIV1ID0198 |
Primer pair |
RT-LAMP |
Primer reverse |
proteaseLoopR |
18 |
|
TATCAAAGTAAGACAGTA |
2411-2428 | gag |
UAUCAAAGUAAGACAGUA |
31 |
HIV1ID0199 |
Primer pair |
Alu-PCR |
Primer forward |
MH531 |
20 |
143 |
TGTGTGCCCGTCTGTTGTGT |
557-576 | LTR |
UGUGUGCCCGUCUGUUGUGU |
32 |
HIV1ID0200 |
Primer pair |
Alu-PCR |
Primer reverse |
MH532 |
20 |
|
GAGTCCTGCGTCGAGAGAGC |
680-699 | LTR |
GCUCUCUCGACGCAGGACUC |
32 |
HIV1ID0201 |
Probe |
Alu-PCR |
Probe |
LRT-P |
20 |
|
CAGTGGCGCCCGAACAGGGA |
633-652 | LTR |
CAGUGGCGCCCGAACAGGGA |
32 |
HIV1ID0202 |
Primer pair |
Alu-PCR |
Primer forward |
MH535 |
23 |
|
AACTAGGGAACCCACTGCTTAAG |
500-522 | LTR |
AACUAGGGAACCCACUGCUUAAG |
32 |
HIV1ID0203 |
Primer pair |
Alu-PCR |
Primer reverse |
MH536 |
24 |
|
TCCACAGATCAAGGATATCTTGTC |
28-51 | LTR |
GACAAGAUAUCCUUGAUCUGUGGA |
32 |
HIV1ID0204 |
Probe |
Alu-PCR |
Probe |
MH603 |
30 |
|
ACACTACTTGAAGCACTCAAGGCAAGCTTT |
530-559 | LTR |
AAAGCUUGCCUUGAGUGCUUCAAGUAGUGU |
32 |
HIV1ID0205 |
Primer pair |
qRT-PCR |
PCR primer forward |
"HIV-1" |
22 |
|
CCAAAGTAGCATGACAAAAATC |
3029-3050 | pol |
CCAAAGUAGCAUGACAAAAAUC |
42 |
HIV1ID0206 |
Primer pair |
qRT-PCR |
PCR primer reverse |
"HIV-1" |
28 |
|
GTTCATAACCCATCCAAAGGAATGGAGG |
3222-3249 | pol |
CCUCCAUUCCUUUGGAUGGGUUAUGAAC |
42 |
HIV1ID0207 |
Probe |
PCR |
Probe |
"Proviral HIV-1" |
26 |
|
AGTAGTGTGTGCCCGTCTGTTTAMRA |
9637-9662 | LTR |
AGUAGUGUGUGCCCGUCUGUUGUGUG |
43 |
HIV1ID0208 |
Primer pair |
PCR |
PCR primer forward |
"Proviral HIV-1" |
22 |
|
GGTCTCTCTGGTTAGACCAGAT |
455-476 | LTR |
GGUCUCUCUGGUUAGACCAGAU |
43 |
HIV1ID0209 |
Primer pair |
PCR |
PCR primer reverse |
"Proviral HIV-1" |
22 |
|
CTGCTAGAGATTTTCCACACTG |
614-635 | LTR |
CAGUGUGGAAAAUCUCUAGCAG |
43 |
HIV1ID0210 |
Primer |
Site-directed mutagenesis |
PCR primer |
"XS 431V R" |
33 |
|
GAGAGACAGGTTAATTTTTTAGGGAAGATC(...) |
2071-2104 | gag |
GAGAGACAGGCUAAUUUUUUAGGGAAGAUC(...) |
44 |
HIV1ID0211 |
Primer |
Site-directed mutagenesis |
PCR primer |
"XS 431V F" |
33 |
|
CCAGATCTTCCCTAAAAAATTAACCTGTCT(...) |
2091-2124 | gag |
AGGGAAGAUCUGGCCUUCCUACAAGGGAAG(...) |
44 |
HIV1ID0212 |
Primer |
Site-directed mutagenesis |
PCR primer |
"V18BS 431 AR" |
30 |
|
CCCTAAAAAATTAGCCTGTCTCTCAGTACA |
2065-2094 | gag |
UGUACUGAGAGACAGGCUAAUUUUUUAGGG |
44 |
HIV1ID0213 |
Primer |
Site-directed mutagenesis |
PCR primer |
"V18BS 431 AF" |
30 |
|
TGTACTGAGAGACAGGCTAATTTTTTAGGG |
2065-2094 | gag |
UGUACUGAGAGACAGGCUAAUUUUUUAGGG |
44 |
HIV1ID0214 |
Primer |
Site-directed mutagenesis |
PCR primer |
"V16XS 437 VR" |
30 |
|
CCTTGTGGGAAGGCCAGACCTTCCCTAAAA |
61-90 | 5'LTR |
CACAAGGCUACUUCCCUGAUUAGCAGAACU |
44 |
HIV1ID0215 |
Primer |
Site-directed mutagenesis |
PCR primer |
"V16XS 437 VF" |
30 |
|
TTTTAGGGAAGGTCTGGCCTTCCCACAAGG |
2087-2116 | gag |
UUUUAGGGAAGAUCUGGCCUUCCUACAAGG |
44 |
HIV1ID0216 |
Primer |
Site-directed mutagenesis |
PCR primer |
"V16BS 437 IR" |
34 |
|
GGGGGAAGGCCAGATCTTCCCTAAAAAATT(...) |
2079-2112 | gag |
GGCUAAUUUUUUAGGGAAGAUCUGGCCUUC(...) |
44 |
HIV1ID0217 |
Primer |
Site-directed mutagenesis |
PCR primer |
"V16BS 437 IF" |
34 |
|
GGCTAATTTTTTAGGGAAGATCTGGCCTTC(...) |
2079-2112 | gag |
GGCUAAUUUUUUAGGGAAGAUCUGGCCUUC(...) |
44 |
HIV1ID0218 |
Primer |
Site-directed mutagenesis |
PCR primer |
"V13BS 431AR" |
26 |
|
CCCTAAAAAATTAGCCTGTCTCTCAG |
2069-2094 | gag |
CUGAGAGACAGGCUAAUUUUUUAGGG |
44 |
HIV1ID0219 |
Primer |
Site-directed mutagenesis |
PCR primer |
"V13BS 431AF" |
26 |
|
CTGAGAGACAGGCTAATTTTTTAGGG |
2069-2094 | gag |
CUGAGAGACAGGCUAAUUUUUUAGGG |
44 |
HIV1ID0220 |
Primer pair |
PCR |
PCR primer forward |
"5'HIV-TR-16" |
26 |
|
CCTCTATTGTGTGCATCAAAGGATAG |
1041-1066 | gag |
CCUCUAUUGUGUGCAUCAAAGGAUAG |
45 |
HIV1ID0221 |
Primer pair |
PCR |
PCR primer reverse |
"5'HIV-TR-16" |
26 |
|
GGCTTCCTTGGTGTCTTTTACATCTA |
1089-1114 | gag |
UUUAGACAAGAUAGAGGAAGAGCAAA |
45 |
HIV1ID0222 |
Primer pair |
PCR |
PCR primer forward |
"5'HIV-TR-15" |
23 |
|
ACAACCATCCCTTCAGACAGGAT |
981-1003 | gag |
ACAACCAUCCCUUCAGACAGGAU |
45 |
HIV1ID0223 |
Primer pair |
PCR |
PCR primer reverse |
"5'HIV-TR-15" |
25 |
|
CCTTTGATGCACACAATCGAGGACT |
1038-1062 | gag |
AACCCUCUAUUGUGUGCAUCAAAGG |
45 |
HIV1ID0224 |
Primer pair |
PCR |
PCR primer forward |
"5'HIV-TR-14" |
22 |
|
ACTGGGACAGCTACAACCATCC |
969-990 | gag |
ACUGGGACAGCUACAACCAUCC |
45 |
HIV1ID0225 |
Primer pair |
PCR |
PCR primer reverse |
"5'HIV-TR-14" |
25 |
|
AAGTTCTTCTGATCCTGTCTGAAGG |
990-1014 | gag |
CCUUCAGACAGGAUCAGAAGAACUU |
45 |
HIV1ID0226 |
Primer pair |
PCR |
PCR primer forward |
"5'HIV-TR-13" |
26 |
|
GAGACATCAGAAGGCTGTAGACAAAT |
923-943 | gag |
CAGUUAAUCCUGGCCUGUUAG |
45 |
HIV1ID0227 |
Primer pair |
PCR |
PCR primer reverse |
"5'HIV-TR-13" |
21 |
|
GGATGGTTGTAGCTGTCCCAG |
970-990 | gag |
CUGGGACAGCUACAACCAUCC |
45 |
HIV1ID0228 |
Primer pair |
PCR |
PCR primer forward |
"5'HIV-TR-12" |
22 |
|
GATTCGCAGTTAATCCTGGCCT |
918-938 | gag |
AUUCGCAGUUAAUCCUGGCCU |
45 |
HIV1ID0229 |
Primer pair |
PCR |
PCR primer reverse |
"5'HIV-TR-12" |
28 |
|
CCAGTATTTGTCTACAGCCTTCTGATGT |
946-973 | gag |
ACAUCAGAAGGCUGUAGACAAAUACUGG |
45 |
HIV1ID0230 |
Primer pair |
PCR |
PCR primer forward |
"5'HIV-TR-11" |
21 |
|
GGGAGCTAGAACGATTCGCAG |
905-925 | gag |
GGGAGCUAGAACGAUUCGCAG |
45 |
HIV1ID0231 |
Primer pair |
PCR |
PCR primer reverse |
"5'HIV-TR-11" |
26 |
|
CTGATGTCTCTAAAAGGCCAGGATTA |
927-952 | gag |
UAAUCCUGGCCUGUUAGAAACAUCAG |
45 |
HIV1ID0232 |
Primer pair |
PCR |
PCR primer forward |
"5'HIV-TR-10" |
21 |
|
AAAATTCGGTTAAGGCCAGGG |
841-861 | gag |
AAAAUUCGGUUAAGGCCAGGG |
45 |
HIV1ID0233 |
Primer pair |
PCR |
PCR primer reverse |
"5'HIV-TR-10" |
25 |
|
GGATTAACTGCGAATCGTTCTAGCT |
908-932 | gag |
AGCUAGAACGAUUCGCAGUUAAUCC |
45 |
HIV1ID0234 |
Primer pair |
PCR |
PCR primer forward |
"5'HIV-TR-8" |
23 |
|
GCGGAGGCTAGAAGGAGAGAGAT |
769-791 | LTR |
GCGGAGGCUAGAAGGAGAGAGAU |
45 |
HIV1ID0235 |
Primer pair |
PCR |
PCR primer reverse |
"5'HIV-TR-8" |
21 |
|
TAATACCGACGCTCTCGCACC |
813-835 | gag |
AAGCGGGGGAGAAUUAGAUCGAU |
45 |
HIV1ID0236 |
Primer pair |
PCR |
PCR primer forward |
"5'HIV-TR-9" |
21 |
|
GCGAGAGCGTCGGTATTAAGC |
796-816 | gag |
GCGAGAGCGUCAGUAUUAAGC |
45 |
HIV1ID0237 |
Primer pair |
PCR |
PCR primer reverse |
"5'HIV-TR-9" |
19 |
|
TTTCCCCCTGGCCTTAACC |
848-866 | gag |
GGUUAAGGCCAGGGGGAAA |
45 |
HIV1ID0238 |
Primer pair |
PCR |
PCR primer forward |
"5'HIV-TR-7" |
21 |
|
CGACTGGTGAGTACGCCAAAA |
738-758 | LTR |
CGACUGGUGAGUACGCCAAAA |
45 |
HIV1ID0239 |
Primer pair |
PCR |
PCR primer reverse |
"5'HIV-TR-7" |
23 |
|
ATCTCTCTCCTTCTAGCCTCCGC |
769-791 | LTR |
GCGGAGGCUAGAAGGAGAGAGAU |
45 |
HIV1ID0240 |
Primer pair |
PCR |
PCR primer forward |
"5'HIV-TR-6" |
20 |
|
CAGGACTCGGCTTGCTGAAG |
692-711 | LTR |
CAGGACUCGGCUUGCUGAAG |
45 |
HIV1ID0241 |
Primer pair |
PCR |
PCR primer reverse |
"5'HIV-TR-6" |
15 |
|
CACCAGTCGCCGCCC |
732-746 | LTR |
GGGCGGCGACUGGUG |
45 |
HIV1ID0242 |
Primer pair |
PCR |
PCR primer forward |
"5'HIV-TR-5" |
16 |
|
GTGGCGCCCGAACAGG |
635-650 | LTR |
GUGGCGCCCGAACAGG |
45 |
HIV1ID0243 |
Primer pair |
PCR |
PCR primer reverse |
"5'HIV-TR-5" |
15 |
|
TTGCCGTGCGCGCTT |
709-723 | LTR |
AAGCGCGCACGGCAA |
45 |
HIV1ID0244 |
Primer pair |
PCR |
PCR primer forward |
"5'HIV-TR-4" |
25 |
|
GAGATCCCTCAGACCCTTTTAGTCA |
591-615 | 5'LTR |
GAGAUCCCUCAGACCCUUUUAGUCA |
45 |
HIV1ID0245 |
Primer pair |
PCR |
PCR primer reverse |
"5'HIV-TR-4" |
19 |
|
TTCAAGTCCCTGTTCGGGC |
640-658 | LTR |
GCCCGAACAGGGACCUGAA |
45 |
HIV1ID0246 |
Primer pair |
PCR |
PCR primer forward |
"5'HIV-TR-3" |
21 |
|
AGTGTGTGCCCGTCTGTTGTG |
555-575 | 5'LTR |
AGUGUGUGCCCGUCUGUUGUG |
45 |
HIV1ID0247 |
Primer pair |
PCR |
PCR primer reverse |
"5'HIV-TR-3" |
27 |
|
TGACTAAAAGGGTCTGAGGGATCTCTA |
589-615 | 5'LTR |
UAGAGAUCCCUCAGACCCUUUUAGUCA |
45 |
HIV1ID0248 |
Primer pair |
PCR |
PCR primer forward |
"5'HIV-TR-2" |
23 |
|
AAGCCTCAATAAAGCTTGCCTTG |
520-542 | 5'LTR |
AAGCCUCAAUAAAGCUUGCCUUG |
45 |
HIV1ID0249 |
Primer pair |
PCR |
PCR primer reverse |
"5'HIV-TR-2" |
21 |
|
AGTCACACAACAGACGGGCAC |
560-580 | 5'LTR |
GUGCCCGUCUGUUGUGUGACU |
45 |
HIV1ID0250 |
Primer pair |
PCR |
PCR primer forward |
"5'HIV-TR-1" |
23 |
|
TCTCTGGCTAACTAGGGAACCCA |
491-513 | 5'LTR |
UCUCUGGCUAACUAGGGAACCCA |
45 |
HIV1ID0251 |
Primer pair |
PCR |
PCR primer reverse |
"5'HIV-TR-1" |
23 |
|
GCACTCAAGGCAAGCTTTATTGA |
525-547 | 5'LTR |
UCAAUAAAGCUUGCCUUGAGUGC |
45 |
HIV1ID0252 |
Primer pair |
PCR |
PCR primer forward |
"LEX074" |
17 |
|
AAGAGTGCTCCCGTGTG |
7733-7749 | env |
AAGAGUGGUGCAGAGAG |
46 |
HIV1ID0253 |
Primer pair |
PCR |
PCR primer reverse |
"LEX074" |
20 |
|
GACAATGCAGAACTGGGTAA |
7059-7078 | env |
GACAAUGCUAAAACCAUAAU |
46 |
HIV1ID0254 |
siRNA |
Gene silencing |
siRNA sense |
"siControl" |
21 |
|
GUACCGCACGUCAUUCGUAUC |
7838-7858 | env |
GGUACAGGCCAGACAAUUAUU |
47 |
HIV1ID0255 |
siRNA |
Gene silencing |
siRNA antisense |
"siControl" |
21 |
|
UACGAAUGACGUGCGGUACGU |
5538-5558 | sor |
UACGAAACUGACAGAGGAUAG |
47 |
HIV1ID0256 |
siRNA |
Gene silencing |
siRNA sense |
"si7658" |
21 |
|
GGAGAAGUGAAUUAUAUAAAU |
7660-7680 | env |
GGAGAAGUGAAUUAUAUAAAU |
47 |
HIV1ID0257 |
siRNA |
Gene silencing |
siRNA antisense |
"si7658" |
21 |
|
UUAUAUAAUUCACUUCUCCAA |
7658-7678 | env |
UUGGAGAAGUGAAUUAUAUAA |
47 |
HIV1ID0258 |
siRNA |
Gene silencing |
siRNA sense |
"si7653" |
21 |
|
CAAUUGGAGAAGUGAAUUAUA |
7655-7675 | env |
CAAUUGGAGAAGUGAAUUAUA |
47 |
HIV1ID0259 |
siRNA |
Gene silencing |
siRNA antisense |
"si7653" |
21 |
|
UAAUUCACUUCUCCAAUUGUC |
7653-7673 | env |
GACAAUUGGAGAAGUGAAUUA |
47 |
HIV1ID0260 |
siRNA |
Gene silencing |
siRNA sense |
"si4961" |
21 |
|
GUGAAGGGGCAGUAGUAAUAC |
4963-4983 | pol |
GUGAAGGGGCAGUAGUAAUAC |
47 |
HIV1ID0261 |
siRNA |
Gene silencing |
siRNA antisense |
"si4961" |
21 |
|
AUUACUACUGCCCCUUCACCU |
4961-4981 | pol |
AGGUGAAGGGGCAGUAGUAAU |
47 |
HIV1ID0262 |
siRNA |
Gene silencing |
siRNA sense |
"si4960" |
21 |
|
GGUGAAGGGGCAGUAGUAAUA |
4962-4982 | pol |
GGUGAAGGGGCAGUAGUAAUA |
47 |
HIV1ID0263 |
siRNA |
Gene silencing |
siRNA antisense |
"si4960" |
21 |
|
UUACUACUGCCCCUUCACCUU |
4960-4980 | pol |
AAGGUGAAGGGGCAGUAGUAA |
47 |
HIV1ID0264 |
siRNA |
Gene silencing |
siRNA sense |
"si4888" |
21 |
|
CAAAAUUUUCGGGUUUAUUAC |
4890-4910 | pol |
CAAAAUUUUCGGGUUUAUUAC |
47 |
HIV1ID0265 |
siRNA |
Gene silencing |
siRNA antisense |
"si4888" |
21 |
|
AAUAAACCCGAAAAUUUUGAA |
4888-4908 | pol |
UUCAAAAUUUUCGGGUUUAUU |
47 |
HIV1ID0266 |
siRNA |
Gene silencing |
siRNA sense |
"si4840" |
21 |
|
GCAACAGACAUACAAACUAAA |
4842-4862 | pol |
GCAACAGACAUACAAACUAAA |
47 |
HIV1ID0267 |
siRNA |
Gene silencing |
siRNA antisense |
"si4840" |
21 |
|
UAGUUUGUAUGUCUGUUGCUA |
4840-4860 | pol |
UAGCAACAGACAUACAAACUA |
47 |
HIV1ID0268 |
siRNA |
Gene silencing |
siRNA sense |
"si4809" |
21 |
|
CAGUGCAGGGGAAAGAAUAGU |
4811-4831 | pol |
CAGUGCAGGGGAAAGAAUAGU |
47 |
HIV1ID0269 |
siRNA |
Gene silencing |
siRNA antisense |
"si4809" |
21 |
|
UAUUCUUUCCCCUGCACUGUA |
4809-4829 | pol |
UACAGUGCAGGGGAAAGAAUA |
47 |
HIV1ID0270 |
siRNA |
Gene silencing |
siRNA sense |
"si4806" |
21 |
|
GUACAGUGCAGGGGAAAGAAU |
4808-4828 | pol |
GUACAGUGCAGGGGAAAGAAU |
47 |
HIV1ID0271 |
siRNA |
Gene silencing |
siRNA antisense |
"si4806" |
21 |
|
UCUUUCCCCUGCACUGUACCC |
4806-4826 | pol |
GGGUACAGUGCAGGGGAAAGA |
47 |
HIV1ID0272 |
siRNA |
Gene silencing |
siRNA sense |
"si4794" |
21 |
|
GGGGAUUGGGGGGUACAGUGC |
4796-4816 | pol |
GGGGAUUGGGGGGUACAGUGC |
47 |
HIV1ID0273 |
siRNA |
Gene silencing |
siRNA antisense |
"si4794" |
21 |
|
ACUGUACCCCCCAAUCCCCCC |
4794-4814 | pol |
GGGGGGAUUGGGGGGUACAGU |
47 |
HIV1ID0274 |
siRNA |
Gene silencing |
siRNA sense |
"si4753" |
21 |
|
GUACAAAUGGCAGUAUUCAUC |
4755-4775 | pol |
GUACAAAUGGCAGUAUUCAUC |
47 |
HIV1ID0275 |
siRNA |
Gene silencing |
siRNA antisense |
"si4753" |
21 |
|
UGAAUACUGCCAUUUGUACUG |
4753-4773 | pol |
CAGUACAAAUGGCAGUAUUCA |
47 |
HIV1ID0276 |
siRNA |
Gene silencing |
siRNA sense |
"si4751" |
21 |
|
CAGUACAAAUGGCAGUAUUCA |
4753-4773 | pol |
CAGUACAAAUGGCAGUAUUCA |
47 |
HIV1ID0277 |
siRNA |
Gene silencing |
siRNA antisense |
"si4751" |
21 |
|
AAUACUGCCAUUUGUACUGCU |
4751-4771 | pol |
AGCAGUACAAAUGGCAGUAUU |
47 |
HIV1ID0278 |
siRNA |
Gene silencing |
siRNA sense |
"si4750" |
21 |
|
GCAGUACAAAUGGCAGUAUUC |
4752-4772 | pol |
GCAGUACAAAUGGCAGUAUUC |
47 |
HIV1ID0279 |
siRNA |
Gene silencing |
siRNA antisense |
"si4750" |
21 |
|
AUACUGCCAUUUGUACUGCUG |
4750-4770 | pol |
CAGCAGUACAAAUGGCAGUAU |
47 |
HIV1ID0280 |
siRNA |
Gene silencing |
siRNA sense |
"si4746" |
21 |
|
GACAGCAGUACAAAUGGCAGU |
4748-4768 | pol |
GACAGCAGUACAAAUGGCAGU |
47 |
HIV1ID0281 |
siRNA |
Gene silencing |
siRNA antisense |
"si4746" |
21 |
|
UGCCAUUUGUACUGCUGUCUU |
4746-4766 | pol |
AAGACAGCAGUACAAAUGGCA |
47 |
HIV1ID0282 |
siRNA |
Gene silencing |
siRNA sense |
"si4652" |
21 |
|
CCUACAAUCCCCAAAGUCAAG |
4654-4674 | pol |
CCUACAAUCCCCAAAGUCAAG |
47 |
HIV1ID0283 |
siRNA |
Gene silencing |
siRNA antisense |
"si4652" |
21 |
|
UGACUUUGGGGAUUGUAGGGA |
4652-4672 | pol |
UCCCUACAAUCCCCAAAGUCA |
47 |
HIV1ID0284 |
siRNA |
Gene silencing |
siRNA sense |
"si4378" |
21 |
|
CAUGGACAAGUAGACUGUAGU |
4380-4400 | pol |
CAUGGACAAGUAGACUGUAGU |
47 |
HIV1ID0285 |
siRNA |
Gene silencing |
siRNA antisense |
"si4378" |
21 |
|
UACAGUCUACUUGUCCAUGCA |
4378-4398 | pol |
UGCAUGGACAAGUAGACUGUA |
47 |
HIV1ID0286 |
siRNA |
Gene silencing |
siRNA sense |
"si4373" |
21 |
|
CCAUGCAUGGACAAGUAGACU |
4375-4395 | pol |
CCAUGCAUGGACAAGUAGACU |
47 |
HIV1ID0287 |
siRNA |
Gene silencing |
siRNA antisense |
"si4373" |
21 |
|
UCUACUUGUCCAUGCAUGGCU |
4373-4393 | pol |
AGCCAUGCAUGGACAAGUAGA |
47 |
HIV1ID0288 |
siRNA |
Gene silencing |
siRNA sense |
"si4175" |
21 |
|
GAGGAAAUGAACAAGUAGAUA |
4177-4197 | pol |
GAGGAAAUGAACAAGUAGAUA |
47 |
HIV1ID0289 |
siRNA |
Gene silencing |
siRNA antisense |
"si4175" |
21 |
|
UCUACUUGUUCAUUUCCUCCA |
4175-4195 | pol |
UGGAGGAAAUGAACAAGUAGA |
47 |
HIV1ID0290 |
siRNA |
Gene silencing |
siRNA sense |
"si3011" |
21 |
|
GAUCACCAGCAAUAUUCCAAA |
3013-3033 | pol |
GAUCACCAGCAAUAUUCCAAA |
47 |
HIV1ID0291 |
siRNA |
Gene silencing |
siRNA antisense |
"si3011" |
21 |
|
UGGAAUAUUGCUGGUGAUCCU |
3011-3031 | pol |
AGGAUCACCAGCAAUAUUCCA |
47 |
HIV1ID0292 |
siRNA |
Gene silencing |
siRNA sense |
"si3006" |
21 |
|
GAAAGGAUCACCAGCAAUAUU |
3008-3028 | pol |
GAAAGGAUCACCAGCAAUAUU |
47 |
HIV1ID0293 |
siRNA |
Gene silencing |
siRNA antisense |
"si3006" |
21 |
|
UAUUGCUGGUGAUCCUUUCCA |
3006-3026 | pol |
UGGAAAGGAUCACCAGCAAUA |
47 |
HIV1ID0294 |
siRNA |
Gene silencing |
siRNA sense |
"si3005" |
21 |
|
GGAAAGGAUCACCAGCAAUAU |
3007-3027 | pol |
GGAAAGGAUCACCAGCAAUAU |
47 |
HIV1ID0295 |
siRNA |
Gene silencing |
siRNA antisense |
"si3005" |
21 |
|
AUUGCUGGUGAUCCUUUCCAU |
3005-3025 | pol |
AUGGAAAGGAUCACCAGCAAU |
47 |
HIV1ID0296 |
siRNA |
Gene silencing |
siRNA sense |
"si3000" |
21 |
|
GGGAUGGAAAGGAUCACCAGC |
3002-3022 | pol |
GGGAUGGAAAGGAUCACCAGC |
47 |
HIV1ID0297 |
siRNA |
Gene silencing |
siRNA antisense |
"si3000" |
21 |
|
UGGUGAUCCUUUCCAUCCCUG |
3000-3020 | pol |
CAGGGAUGGAAAGGAUCACCA |
47 |
HIV1ID0298 |
siRNA |
Gene silencing |
siRNA sense |
"si2486" |
21 |
|
CUACACCUGUCAACAUAAUUG |
2488-2508 | pol |
CUACACCUGUCAACAUAAUUG |
47 |
HIV1ID0299 |
siRNA |
Gene silencing |
siRNA antisense |
"si2486" |
21 |
|
AUUAUGUUGACAGGUGUAGGU |
2486-2506 | pol |
ACCUACACCUGUCAACAUAAU |
47 |
HIV1ID0300 |
siRNA |
Gene silencing |
siRNA sense |
"si2485" |
21 |
|
CCUACACCUGUCAACAUAAUU |
2487-2507 | pol |
CCUACACCUGUCAACAUAAUU |
47 |
HIV1ID0301 |
siRNA |
Gene silencing |
siRNA antisense |
"si2485" |
21 |
|
UUAUGUUGACAGGUGUAGGUC |
2485-2505 | pol |
GACCUACACCUGUCAACAUAA |
47 |
HIV1ID0302 |
siRNA |
Gene silencing |
siRNA sense |
"si2333" |
21 |
|
CAGAUGAUACAGUAUUAGAAG |
2335-2355 | gag |
CAGAUGAUACAGUAUUAGAAG |
47 |
HIV1ID0303 |
siRNA |
Gene silencing |
siRNA antisense |
"si2333" |
21 |
|
UCUAAUACUGUAUCAUCUGCU |
2333-2353 | gag |
AGCAGAUGAUACAGUAUUAGA |
47 |
HIV1ID0304 |
siRNA |
Gene silencing |
siRNA sense |
"si2330" |
21 |
|
GAGCAGAUGAUACAGUAUUAG |
2332-2352 | gag |
GAGCAGAUGAUACAGUAUUAG |
47 |
HIV1ID0305 |
siRNA |
Gene silencing |
siRNA antisense |
"si2330" |
21 |
|
AAUACUGUAUCAUCUGCUCCU |
2330-2350 | gag |
AGGAGCAGAUGAUACAGUAUU |
47 |
HIV1ID0306 |
siRNA |
Gene silencing |
siRNA sense |
"si2329" |
21 |
|
GGAGCAGAUGAUACAGUAUUA |
2331-2351 | gag |
GGAGCAGAUGAUACAGUAUUA |
47 |
HIV1ID0307 |
siRNA |
Gene silencing |
siRNA antisense |
"si2329" |
21 |
|
AUACUGUAUCAUCUGCUCCUG |
2329-2349 | gag |
CAGGAGCAGAUGAUACAGUAU |
47 |
HIV1ID0308 |
siRNA |
Gene silencing |
siRNA sense |
"si2075" |
21 |
|
CAGGCUAAUUUUUUAGGGAAG |
2077-2097 | gag |
CAGGCUAAUUUUUUAGGGAAG |
47 |
HIV1ID0309 |
siRNA |
Gene silencing |
siRNA antisense |
"si2075" |
21 |
|
UCCCUAAAAAAUUAGCCUGUC |
2075-2095 | gag |
GACAGGCUAAUUUUUUAGGGA |
47 |
HIV1ID0310 |
siRNA |
Gene silencing |
siRNA sense |
"si1817" |
21 |
|
GAAGAAAUGAUGACAGCAUGU |
1819-1839 | gag |
GAAGAAAUGAUGACAGCAUGU |
47 |
HIV1ID0311 |
siRNA |
Gene silencing |
siRNA antisense |
"si1817" |
21 |
|
AUGCUGUCAUCAUUUCUUCUA |
1817-1837 | gag |
UAGAAGAAAUGAUGACAGCAU |
47 |
HIV1ID0312 |
siRNA |
Gene silencing |
siRNA sense |
"si1490" |
21 |
|
GACAUAGCAGGAACUACUAGU |
1492-1512 | gag |
GACAUAGCAGGAACUACUAGU |
47 |
HIV1ID0313 |
siRNA |
Gene silencing |
siRNA antisense |
"si1490" |
21 |
|
UAGUAGUUCCUGCUAUGUCAC |
1490-1510 | gag |
GUGACAUAGCAGGAACUACUA |
47 |
HIV1ID0314 |
siRNA |
Gene silencing |
siRNA sense |
"si770" |
21 |
|
GAGGCUAGAAGGAGAGAGAUG |
772-792 | gag |
GAGGCUAGAAGGAGAGAGAUG |
47 |
HIV1ID0315 |
siRNA |
Gene silencing |
siRNA antisense |
"si770" |
21 |
|
UCUCUCUCCUUCUAGCCUCCG |
770-790 | gag |
CGGAGGCUAGAAGGAGAGAGA |
47 |
HIV1ID0316 |
siRNA |
Gene silencing |
siRNA sense |
"si764" |
21 |
|
CUAGCGGAGGCUAGAAGGAGA |
766-786 | gag |
CUAGCGGAGGCUAGAAGGAGA |
47 |
HIV1ID0317 |
siRNA |
Gene silencing |
siRNA antisense |
"si764" |
21 |
|
UCCUUCUAGCCUCCGCUAGUC |
764-784 | gag |
GACUAGCGGAGGCUAGAAGGA |
47 |
HIV1ID0318 |
siRNA |
Gene silencing |
siRNA sense |
"si690" |
21 |
|
CAGGACUCGGCUUGCUGAAGC |
692-712 | LTR |
CAGGACUCGGCUUGCUGAAGC |
47 |
HIV1ID0319 |
siRNA |
Gene silencing |
siRNA antisense |
"si690" |
21 |
|
UUCAGCAAGCCGAGUCCUGCG |
690-710 | LTR |
CGCAGGACUCGGCUUGCUGAA |
47 |
HIV1ID0320 |
siRNA |
Gene silencing |
siRNA sense |
"si689" |
21 |
|
GCAGGACUCGGCUUGCUGAAG |
691-711 | LTR |
GCAGGACUCGGCUUGCUGAAG |
47 |
HIV1ID0321 |
siRNA |
Gene silencing |
siRNA antisense |
"si689" |
21 |
|
UCAGCAAGCCGAGUCCUGCGU |
689-709 | LTR |
ACGCAGGACUCGGCUUGCUGA |
47 |
HIV1ID0322 |
siRNA |
Gene silencing |
siRNA sense |
"si575" |
21 |
|
GACUCUGGUAACUAGAGAUCC |
577-597 | 5'LTR |
GACUCUGGUAACUAGAGAUCC |
47 |
HIV1ID0323 |
siRNA |
Gene silencing |
siRNA antisense |
"si575" |
21 |
|
AUCUCUAGUUACCAGAGUCAC |
575-595 | 5'LTR |
GUGACUCUGGUAACUAGAGAU |
47 |
HIV1ID0324 |
siRNA |
Gene silencing |
siRNA sense |
"si554" |
21 |
|
GUGUGUGCCCGUCUGUUGUGU |
576-596 | 5'LTR |
UGACUCUGGUAACUAGAGAUC |
47 |
HIV1ID0325 |
siRNA |
Gene silencing |
siRNA antisense |
"si554" |
21 |
|
ACAACAGACGGGCACACACUA |
554-574 | 5'LTR |
UAGUGUGUGCCCGUCUGUUGU |
47 |
HIV1ID0326 |
siRNA |
Gene silencing |
siRNA sense |
"si521" |
21 |
|
CCUCAAUAAAGCUUGCCUUGA |
523-543 | 5'LTR |
CCUCAAUAAAGCUUGCCUUGA |
47 |
HIV1ID0327 |
siRNA |
Gene silencing |
siRNA antisense |
"si521" |
21 |
|
AAGGCAAGCUUUAUUGAGGCU |
521-541 | 5'LTR |
AGCCUCAAUAAAGCUUGCCUU |
47 |
HIV1ID0328 |
siRNA |
Gene silencing |
siRNA sense |
"si515" |
21 |
|
CUUAAGCCUCAAUAAAGCUUG |
517-537 | 5'LTR |
CUUAAGCCUCAAUAAAGCUUG |
47 |
HIV1ID0329 |
siRNA |
Gene silencing |
siRNA antisense |
"si515" |
21 |
|
AGCUUUAUUGAGGCUUAAGCA |
515-535 | 5'LTR |
UGCUUAAGCCUCAAUAAAGCU |
47 |
HIV1ID0330 |
siRNA |
Gene silencing |
siRNA sense |
"si512" |
21 |
|
CUGCUUAAGCCUCAAUAAAGC |
514-534 | 5'LTR |
CUGCUUAAGCCUCAAUAAAGC |
47 |
HIV1ID0331 |
siRNA |
Gene silencing |
siRNA antisense |
"si512" |
21 |
|
UUUAUUGAGGCUUAAGCAGUG |
512-532 | 5'LTR |
CACUGCUUAAGCCUCAAUAAA |
47 |
HIV1ID0332 |
siRNA |
Gene silencing |
siRNA sense |
"si510" |
21 |
|
CACUGCUUAAGCCUCAAUAAA |
512-532 | 5'LTR |
CACUGCUUAAGCCUCAAUAAA |
47 |
HIV1ID0333 |
siRNA |
Gene silencing |
siRNA antisense |
"si510" |
21 |
|
UAUUGAGGCUUAAGCAGUGGG |
510-530 | 5'LTR |
CCCACUGCUUAAGCCUCAAUA |
47 |
HIV1ID0334 |
siRNA |
Gene silencing |
siRNA sense |
"si509" |
21 |
|
CCACUGCUUAAGCCUCAAUAA |
511-531 | 5'LTR |
CCACUGCUUAAGCCUCAAUAA |
47 |
HIV1ID0335 |
siRNA |
Gene silencing |
siRNA antisense |
"si509" |
21 |
|
AUUGAGGCUUAAGCAGUGGGU |
509-529 | 5'LTR |
ACCCACUGCUUAAGCCUCAAU |
47 |
HIV1ID0336 |
siRNA |
Gene silencing |
siRNA sense sequence |
"TAR" |
21 |
|
AGACCAGATCTGAGCCTGGTT |
468-488 | 5'LTR |
AGACCAGAUCUGAGCCUGGGA |
48 |
HIV1ID0337 |
siRNA |
Gene silencing |
siRNA sense sequence |
"Tat(SF2)" |
21 |
|
CTGCTTGTAACAATTGCTATT |
5889-5909 | tat |
CUGCUUGUACCAAUUGCUAUU |
48 |
HIV1ID0338 |
shRNA |
Gene silencing |
shRNA sequence |
"vif" |
49 |
|
GTTCAGAAGTACACATCCCTTCAAGAGAGG(...) |
5193-5213 | sor |
AAGUUCAGAAGUACACAUCCC |
49 |
HIV1ID0339 |
shRNA |
Gene silencing |
shRNA sequence |
"gag" |
49 |
|
GATTGTACTGAGAGACAGGTTCAAGAGACC(...) |
2060-2080 | gag |
AAGAUUGUACUGAGAGACAGG |
49 |
HIV1ID0340 |
shRNA |
Gene silencing |
shRNA sequence |
"rev" |
49 |
|
GGCACTTATCTGGGACGATTTCAAGAGAAT(...) |
8483-8501 | env |
GGCACUUAUCUGGGACGAU |
49 |
HIV1ID0341 |
shRNA |
Gene silencing |
shRNA sequence |
"Nef" |
49 |
|
GTGCCTGGCTAGAAGCACATTCAAGAGATG(...) |
8960-8978 | 27k protein |
GUGCCUGGCUAGAAGCACA |
50 |
HIV1ID0342 |
shRNA |
Gene silencing |
shRNA sequence |
"UTR-B" |
49 |
|
GGCTAGAAGGAGAGAGATGTTCAAGAGACA(...) |
774-792 | LTR |
GGCUAGAAGGAGAGAGAUG |
50 |
HIV1ID0343 |
shRNA |
Gene silencing |
shRNA sequence |
"UTR-A" |
49 |
|
GCGGAGGCTAGAAGGAGAGTTCAAGAGACT(...) |
769-787 | LTR |
GCGGAGGCUAGAAGGAGAG |
50 |
HIV1ID0344 |
shRNA |
Gene silencing |
shRNA sequence |
"TatRev-B" |
49 |
|
CCTATGGCAGGAAGAAGCGTTCAAGAGACG(...) |
5967-6016 | tat |
CCUAUGGCAGGAAGAAGCGGAGACAGCGAC(...) |
50 |
HIV1ID0345 |
shRNA |
Gene silencing |
shRNA sequence |
"TatRev-A" |
49 |
|
GCCTTAGGCATCTCCTATGTTCAAGAGACA(...) |
5954-5972 | tat |
GCCUUAGGCAUCUCCUAUG |
50 |
HIV1ID0346 |
shRNA |
Gene silencing |
shRNA sequence |
"PPT" |
49 |
|
GGGGGGACTGGAAGGGCTATTCAAGAGATA(...) |
9078-9096 | 27k protein |
GGGGGGACUGGAAGGGCUA |
50 |
HIV1ID0347 |
shRNA |
Gene silencing |
shRNA sequence |
"PBS-B" |
51 |
|
TGGCGCCCGAACAGGGACTTTTCAAGAGAA(...) |
636-653 | LTR |
UGGCGCCCGAACAGGGAC |
50 |
HIV1ID0348 |
shRNA |
Gene silencing |
shRNA sequence |
"shRNA-1" |
53 |
|
GTGGCGCCCGAACAGGGACTTTTCAAGAGA(...) |
635-653 | LTR |
GUGGCGCCCGAACAGGGAC |
50 |
HIV1ID0349 |
siRNA |
Gene silencing |
siRNA sense sequence |
"M441" |
21 |
|
CTTGGCACTAACAGCATTATT |
5481-5501 | sor |
CUUGGCACUAGCAGCAUUAAU |
51 |
HIV1ID0350 |
siRNA |
Gene silencing |
siRNA antisense sequence |
"M441" |
21 |
|
TAATGCTGTTAGTGCCAAGTT |
5481-5501 | sor |
CUUGGCACUAGCAGCAUUAAU |
51 |
HIV1ID0351 |
siRNA |
Gene silencing |
siRNA sense sequence |
"M98" |
20 |
|
GAAAGCTAGGGGATGGTTTT |
5139-5158 | sor |
GAAAGCUAGGGGAUGGUUUU |
51 |
HIV1ID0352 |
siRNA |
Gene silencing |
siRNA antisense sequence |
"M98" |
20 |
|
AACCATCCCCTAGCTTTCTT |
5139-5158 | sor |
GAAAGCUAGGGGAUGGUUUU |
51 |
HIV1ID0353 |
siRNA |
Gene silencing |
siRNA sense sequence |
"MTAR" |
21 |
|
AGACCAGATATGAGCCTGGTT |
9553-9573 | 3'LTR |
AGACCAGAUCUGAGCCUGGGA |
51 |
HIV1ID0354 |
siRNA |
Gene silencing |
siRNA antisense sequence |
"MTAR" |
21 |
|
CCAGGCTCATATCTGGTCTTT |
9551-9571 | 3'LTR |
UUAGACCAGAUCUGAGCCUGG |
51 |
HIV1ID0355 |
siRNA |
Gene silencing |
siRNA sense sequence |
"TAR" |
21 |
|
AGACCAGATCTGAGCCTGGTT |
9553-9573 | 3'LTR |
AGACCAGAUCUGAGCCUGGGA |
51 |
HIV1ID0356 |
siRNA |
Gene silencing |
siRNA antisense sequence |
"TAR" |
21 |
|
CCAGGCTCAGATCTGGTCTTT |
9551-9571 | 3'LTR |
UUAGACCAGAUCUGAGCCUGG |
51 |
HIV1ID0357 |
siRNA |
Gene silencing |
siRNA sense sequence |
"nef" |
21 |
|
GTGCCTGGCTAGAAGCACATT |
8960-8980 | 27k protein |
GUGCCUGGCUAGAAGCACAAG |
51 |
HIV1ID0358 |
siRNA |
Gene silencing |
siRNA antisense sequence |
"nef" |
21 |
|
TGTGCTTCTAGCCAGGCACTT |
8968-8988 | 27k protein |
CUAGAAGCACAAGAGGAGGAG |
51 |
HIV1ID0359 |
siRNA |
Gene silencing |
siRNA sense sequence |
"M388" |
21 |
|
GACTTCAAGGGAGATGGCATT |
2916-2936 | pol |
GACUUCAGGAAGUAUACUGCA |
51 |
HIV1ID0360 |
siRNA |
Gene silencing |
siRNA antisense sequence |
"M388" |
21 |
|
TGCCATCTCCCTTGAAGTCTT |
5050-5070 | pol |
AGAUGGCAGGUGAUGAUUGUG |
51 |
HIV1ID0361 |
siRNA |
Gene silencing |
siRNA sense sequence |
"G388" |
21 |
|
GACTTCAAGGAAGATGGCATT |
2916-2936 | pol |
GACUUCAGGAAGUAUACUGCA |
51 |
HIV1ID0362 |
siRNA |
Gene silencing |
siRNA antisense sequence |
"G388" |
21 |
|
TGCCATCTTCCTTGAAGTCTT |
5050-5070 | pol |
AGAUGGCAGGUGAUGAUUGUG |
51 |
HIV1ID0363 |
siRNA |
Gene silencing |
siRNA sense sequence |
"T441" |
21 |
|
CTTGGCACTAGCAGCATTATT |
5481-5501 | sor |
CUUGGCACUAGCAGCAUUAAU |
51 |
HIV1ID0364 |
siRNA |
Gene silencing |
siRNA antisense sequence |
"T441" |
21 |
|
TAATGCTGCTAGTGCCAAGTT |
5479-5499 | sor |
UACUUGGCACUAGCAGCAUUA |
51 |
HIV1ID0365 |
siRNA |
Gene silencing |
siRNA sense sequence |
"T283" |
21 |
|
AGCACACAAGTAGACCCTGTT |
5323-5343 | sor |
AGCACACAAGUAGACCCUGAA |
51 |
HIV1ID0366 |
siRNA |
Gene silencing |
siRNA antisense sequence |
"T283" |
21 |
|
CAGGGTCTACTTGTGTGCTTT |
5321-5341 | sor |
AUAGCACACAAGUAGACCCUG |
51 |
HIV1ID0367 |
siRNA |
Gene silencing |
siRNA sense sequence |
"T98" |
21 |
|
GGAAAGCTAAGGACTGGTTTT |
5138-5158 | sor |
GGAAAGCUAGGGGAUGGUUUU |
51 |
HIV1ID0368 |
siRNA |
Gene silencing |
siRNA antisense sequence |
"T98" |
21 |
|
AACCAGTCCTTAGCTTTCCTT |
3470-3490 | pol |
AGAGAUUCUAAAAGAACCAGU |
51 |
HIV1ID0369 |
siRNA |
Gene silencing |
siRNA sense sequence |
"RT2" |
21 |
|
TGAGACACCAGGGATTAGATT |
2960-2980 | pol |
UGAGACACCAGGGAUUAGAUA |
52 |
HIV1ID0370 |
siRNA |
Gene silencing |
siRNA antisense sequence |
"RT2" |
21 |
|
TCTAATCCCTGGTGTCTCATT |
2958-2978 | pol |
AAUGAGACACCAGGGAUUAGA |
52 |
HIV1ID0371 |
siRNA |
Gene silencing |
siRNA sense sequence |
"RT1" |
21 |
|
GAGACACCAGGGATTAGATTT |
2961-2981 | pol |
GAGACACCAGGGAUUAGAUAU |
52 |
HIV1ID0372 |
siRNA |
Gene silencing |
siRNA antisense sequence |
"RT1" |
21 |
|
ATCTAATCCCTGGTGTCTCTT |
2959-2979 | pol |
AUGAGACACCAGGGAUUAGAU |
52 |
HIV1ID0373 |
siRNA |
Gene silencing |
siRNA sense sequence |
"tat3" |
21 |
|
GAAGCGGAGACAGCGACGATT |
5980-6000 | tat |
GAAGCGGAGACAGCGACGAAG |
52 |
HIV1ID0374 |
siRNA |
Gene silencing |
siRNA antisense sequence |
"tat3" |
21 |
|
TCGTCGCTGTCTCCGCTTCTT |
5978-5998 | tat |
AAGAAGCGGAGACAGCGACGA |
52 |
HIV1ID0375 |
siRNA |
Gene silencing |
siRNA sense sequence |
"tat2" |
21 |
|
CTAGAGCCCTGGAAGCATCTT |
5852-5872 | tat |
CUAGAGCCCUGGAAGCAUCCA |
52 |
HIV1ID0376 |
siRNA |
Gene silencing |
siRNA antisense sequence |
"tat2" |
21 |
|
GATGCTTCCAGGGCTCTAGTT |
5850-5870 | tat |
GACUAGAGCCCUGGAAGCAUC |
52 |
HIV1ID0377 |
siRNA |
Gene silencing |
siRNA sense sequence |
"tat1" |
21 |
|
TATGGCAGGAAGAAGCGGATT |
5969-5989 | tat |
UAUGGCAGGAAGAAGCGGAGA |
52 |
HIV1ID0378 |
siRNA |
Gene silencing |
siRNA antisense sequence |
"tat1" |
21 |
|
TCCGCTTCTTCCTGCCATATT |
5967-5987 | tat |
CCUAUGGCAGGAAGAAGCGGA |
52 |
HIV1ID0379 |
siRNA |
Gene silencing |
shRNA sequence |
"Tat" |
49 |
|
TATGGCAGGAAGAAGCGGATTCAAGAGATC(...) |
5969-5987 | tat |
UAUGGCAGGAAGAAGCGGA |
53 |
HIV1ID0380 |
siRNA |
Gene expression |
siRNA sense sequence |
"p24" |
21 |
|
GATTGTACTGAGAGACAGGCT |
2062-2082 | gag |
GAUUGUACUGAGAGACAGGCU |
54 |