HIV1ID0001
|
Nested PCR |
PCR primer forward |
A1352 |
23 |
95 |
GRAACCCACTGCTTAASSCTCAA |
506-528 |
5'LTR |
GGAACCCACUGCUUAAGCCUCAA |
637-644 |
43 |
0.00 |
0.00 |
92.25 |
30.75 |
1 |
HIV1ID0002
|
Nested PCR |
PCR primer reverse |
A1355 |
23 |
|
GAGGGATCTCTAGNYACCAGAGT |
578-600 |
5'LTR |
ACUCUGGUAACUAGAGAUCCCUC |
725-747 |
61 |
52.17 |
20.00 |
97.29 |
56.49 |
1 |
HIV1ID0003
|
Nested PCR |
PCR primer forward |
A1354 |
21 |
125 |
CTCAATAAAGCTTGCCTTGAG |
524-544 |
5'LTR |
CUCAAUAAAGCUUGCCUUGAG |
648-670 |
49 |
0.00 |
0.00 |
93.93 |
31.31 |
1 |
HIV1ID0004
|
Nested PCR |
PCR primer reverse |
A1353 |
23 |
|
TGTTCGGGCGCCACTGCTAGAGA |
626-648 |
5'LTR |
UCUCUAGCAGUGGCGCCCGAACA |
787-803 |
80 |
0.00 |
0.00 |
96.53 |
32.18 |
1 |
HIV1ID0005
|
SYBR Green real time PCR |
PCR primer reverse |
SK431 |
27 |
142 |
TGCTATGTCAGTTCCCCTTGGTTCTCT |
1474-1500 |
gag |
AGAGAACCAAGGGGAAGUGACAUAGCA |
1849-1875 |
170 |
51.85 |
80.00 |
93.29 |
75.05 |
2; 3; 4; 5; 6; 7; |
HIV1ID0006
|
SYBR Green real time PCR |
PCR primer forward |
SK462 |
30 |
|
AGTTGGAGGACATCAAGCAGCCATGCAAAT |
1359-1388 |
gag |
AGUGGGGGGACAUCAAGCAGCCAUGCAAAU |
1734-1763 |
170 |
56.67 |
60.00 |
92.45 |
69.71 |
2; 3; 4; 5; 6; 7; |
HIV1ID0007
|
PCR |
Probe |
SK102 |
33 |
|
GAGACCATCAATGAGGAAGCTGCAGAATGG(...) |
1396-1428 |
gag |
GAGACCAUCAAUGAGGAAGCUGCAGAAUGG(...) |
1771-1803 |
170 |
54.55 |
80.00 |
92.04 |
75.53 |
2; 3; 7; |
HIV1ID0008
|
PCR |
Probe |
CO3 |
40 |
|
TGAGTTGCAACAGATGCTGTTGCGCCTCAA(...) |
7890-7929 |
env |
CUGAGGGCUAUUGAGGCGCAACAGCAUCUG(...) |
8954-8993 |
170 |
30.00 |
40.00 |
89.17 |
53.06 |
8 |
HIV1ID0009
|
Multiplex-RT PCR & ELISA |
PCR primer forward |
F2 |
23 |
189 |
CAGAAGGAGCCACCCCACAAGAT |
1316-1338 |
gag |
CAGAAGGAGCCACCCCACAAGAU |
1691-1713 |
170 |
43.48 |
40.00 |
93.97 |
59.15 |
9 |
HIV1ID0010
|
Multiplex-RT PCR & ELISA |
PCR primer reverse |
R2 |
25 |
|
TTCCTGCTATGTCACTTCCCCTTGG |
1480-1504 |
gag |
CCAAGGGGAAGUGACAUAGCAGGAA |
1855-1879 |
170 |
48.00 |
60.00 |
94.30 |
67.43 |
10 |
HIV1ID0011
|
Multiplex-RT PCR & ELISA |
Probe |
ziv |
22 |
|
CTTGGTTCTCTCATYTGGCCTG |
1463-1484 |
gag |
CAGGCCAGAUGAGAGAACCAAG |
1838-1859 |
170 |
54.55 |
60.00 |
90.96 |
68.50 |
11 |
HIV1ID0012
|
Multiplex real-time PCR & mole(...) |
PCR primer forward |
|
18 |
151 |
GTACAGTGCAGGGGAAAG |
4808-4825 |
pol |
GUACAGUGCAGGGGAAAG |
5399-5416 |
170 |
44.44 |
80.00 |
96.47 |
73.64 |
12 |
HIV1ID0013
|
Multiplex real-time PCR & mole(...) |
PCR primer reverse |
|
20 |
|
CCAGAGTAGTTTTGCTGGTC |
4939-4958 |
pol |
GACCAGCAAAGCUCCUCUGG |
5530-5549 |
170 |
55.00 |
80.00 |
92.00 |
75.67 |
12 |
HIV1ID0014
|
Multiplex real-time PCR & mole(...) |
Probe (molecular beacons) |
|
32 |
|
CCCGTGGTTTATTACAGGGACAGCAGAACG(...) |
4901-4923 |
pol |
GGUUUAUUACAGGGACAGCAGAA |
5492-5514 |
170 |
52.17 |
60.00 |
96.67 |
69.61 |
12 |
HIV1ID0015
|
Multiplex-RT PCR & ELISA |
PCR primer forward |
SK100 |
19 |
291 |
ATCAAGCAGCCATGCAAAT |
1370-1388 |
gag |
AUCAAGCAGCCAUGCAAAU |
1745-1763 |
170 |
63.16 |
60.00 |
91.33 |
71.50 |
13 |
HIV1ID0016
|
Multiplex-RT PCR & ELISA |
PCR primer reverse |
SK104 |
22 |
|
CTTTTGGTCCTTGTCTTATGTC |
1639-1660 |
gag |
GACAUAAGACAAGGACCAAAGG |
2026-2047 |
170 |
54.55 |
40.00 |
91.37 |
61.97 |
13 |
HIV1ID0017
|
Multiplex-RT PCR & ELISA |
Probe |
H-1 probe |
23 |
|
AATGAGGAGGCTGCAGAATGGGA |
1405-1427 |
gag |
AAUGAGGAAGCUGCAGAAUGGGA |
1780-1802 |
170 |
56.52 |
80.00 |
95.20 |
77.24 |
13 |
HIV1ID0018
|
Multiplex real-time PCR & mole(...) |
PCR primer forward |
SK 38, gagF |
28 |
115 |
ATAATCCACCTATCCCAGTAGGAGAAAT |
1544-1571 |
gag |
AUAAUCCACCUAUCCCAGUAGGAGAAAU |
1928-1958 |
170 |
25.81 |
40.00 |
86.44 |
50.75 |
14; 15; 19; 8; |
HIV1ID0019
|
Multiplex real-time PCR & mole(...) |
PCR primer reverse |
gagR |
27 |
|
TTTGGTCCTTGTCTTATGTCCAGAATG |
1632-1658 |
gag |
CAUUCUGGACAUAAGACAAGGACCAAA |
2019-2045 |
170 |
44.44 |
20.00 |
92.12 |
52.19 |
14; 19; |
HIV1ID0020
|
Multiplex real-time PCR & mole(...) |
Probe (molecular beacons) |
|
45 |
|
GCGAGCCTGGGATTAAATAAAATAGTAAGA(...) |
1591-1623 |
gag |
CUGGGAUUAAAUAAAAUAGUAAGAAUGUAU(...) |
1978-2010 |
170 |
45.45 |
60.00 |
94.26 |
66.57 |
14 |
HIV1ID0021
|
Multiplex real-time PCR & Taqm(...) |
PCR primer forward |
LTR-F |
20 |
76 |
TAAAGCTTGCCTTGAGTGCT |
529-548 |
5'LTR |
UAAAGCUUGCCUUGAGUGCU |
660-671 |
49 |
0.00 |
0.00 |
91.92 |
30.64 |
16 |
HIV1ID0022
|
Multiplex real-time PCR & Taqm(...) |
PCR primer reverse |
LTR-R2 |
24 |
|
GTCTGAGGGATCTCTAGTTACCAG |
581-604 |
5'LTR |
CUGGUAACUAGAGAUCCCUCAGAC |
728-751 |
61 |
54.17 |
40.00 |
97.12 |
63.76 |
16 |
HIV1ID0023
|
Multiplex real-time PCR & Taqm(...) |
Probe (Taqman) |
LTR-P |
26 |
|
AGTAGTGTGTGCCCGTCTGTTGTGTG |
552-577 |
5'LTR |
AGUAGUGUGUGCCCGUCUGUUGUGUG |
684-709 |
61 |
0.00 |
0.00 |
93.09 |
31.03 |
16 |
HIV1ID0024
|
Nested PCR |
PCR primer forward |
WOI1 |
25 |
333 |
GAGAGATGGGTGCGAGAGCGTCAGT |
785-809 |
gag |
GAGAGAUGGGUGCGAGAGCGUCAGU |
1083-1107 |
168 |
8.00 |
20.00 |
95.88 |
41.29 |
17 |
HIV1ID0025
|
Nested PCR |
PCR primer reverse |
WOI2 |
25 |
|
TGTTTTGCTCTTCCTCTATCTTGTC |
1093-1117 |
gag |
GACAAGAUAGAGGAAGAGCAAAACA |
1391-1415 |
170 |
4.00 |
0.00 |
78.69 |
27.56 |
17 |
HIV1ID0026
|
Nested PCR |
PCR primer forward |
WII1-2 |
18 |
|
TGCGAGAGCGTCAGTATT |
795-812 |
gag |
UGCGAGAGCGUCAGUAUU |
1093-1110 |
168 |
11.11 |
0.00 |
95.00 |
35.37 |
17 |
HIV1ID0027
|
Nested PCR |
PCR primer reverse |
WII2 |
19 |
|
AGGGTTGCTACTGTATTAT |
1025-1043 |
gag |
AUAAUACAGUAGCAACCCU |
1323-1341 |
170 |
15.79 |
40.00 |
84.07 |
46.62 |
17 |
HIV1ID0028
|
multiplex real-time PCR & olig(...) |
PCR primer reverse |
HIV_OUT_F |
26 |
284 |
AGAACCGRTCTACATARTCTCTAARG |
1665-1690 |
gag |
CUUUAGAGACUAUGUAGACCGGUUCU |
2052-2077 |
170 |
26.92 |
20.00 |
90.05 |
45.66 |
18 |
HIV1ID0029
|
multiplex real-time PCR & olig(...) |
PCR primer forward |
HIV_OUT_R |
21 |
|
TGAGGARGCTGCAGAATGGGA |
1407-1427 |
gag |
UGAGGAAGCUGCAGAAUGGGA |
1782-1802 |
170 |
52.38 |
80.00 |
94.75 |
75.71 |
18 |
HIV1ID0030
|
multiplex real-time PCR & olig(...) |
PCR primer reverse |
HIV_IN_F_I |
25 |
181 |
TGGYCCTTGTYTTATGTCCARAATG |
1632-1665 |
gag |
CAUUCUGGACAUAAGACAAGGACCAAAGGA(...) |
2019-2052 |
170 |
44.12 |
20.00 |
91.30 |
51.81 |
18 |
HIV1ID0031
|
multiplex real-time PCR & olig(...) |
PCR primer forward |
HIV_IN_R |
23 |
|
AGAACCAAGGGGAAGTGACATAG |
1476-1498 |
gag |
AGAACCAAGGGGAAGUGACAUAG |
1851-1873 |
170 |
52.17 |
20.00 |
93.07 |
55.08 |
18 |
HIV1ID0032
|
SYBR Green real time PCR |
PCR primer forward |
NP51 |
26 |
228 |
GCAGCATAGAACAAAAATAGAGGAGC |
3137-3162 |
pol |
GCAGCAUAGAACAAAAAUAGAGGAGC |
3716-3741 |
170 |
19.23 |
20.00 |
85.54 |
41.59 |
19 |
HIV1ID0033
|
SYBR Green real time PCR |
PCR primer reverse |
NP52 |
24 |
|
GGGTAAATCTGACTTGCCCAATTC |
3341-3364 |
pol |
GAAUUGGGCAAGUCAGAUUUACCC |
3921-3944 |
170 |
20.83 |
40.00 |
90.26 |
50.36 |
19 |
HIV1ID0034
|
SYBR Green real time PCR |
PCR primer forward |
NP170 |
26 |
132 |
GARACCAARAATGATAGGRGGAATTG |
2378-2403 |
pol |
GAAACCAAAAAUGAUAGGGGGAAUUG |
2954-2979 |
170 |
26.92 |
20.00 |
96.97 |
47.97 |
19 |
HIV1ID0035
|
SYBR Green real time PCR |
PCR primer reverse |
NP171 |
23 |
|
CCAATTATGTTGACAGGKGTRGG |
2487-2509 |
pol |
CCUACACCUGUCAACAUAAUUGG |
3063-3088 |
170 |
34.62 |
80.00 |
95.25 |
69.96 |
19 |
HIV1ID0036
|
SYBR Green real time PCR |
PCR primer forward |
NP175 |
25 |
159 |
GRGAAAGAATARTAGACATAATAGC |
4819-4843 |
pol |
GGGAAAGAAUAGUAGACAUAAUAGC |
5410-5434 |
170 |
44.00 |
40.00 |
95.47 |
59.82 |
19 |
HIV1ID0037
|
SYBR Green real time PCR |
PCR primer reverse |
NP174 |
21 |
|
CTACYGCCCCTTYACCTTTCC |
4957-4977 |
pol |
GGAAAGGUGAAGGGGCAGUAG |
5548-5568 |
170 |
66.67 |
80.00 |
98.70 |
81.79 |
19 |
HIV1ID0038
|
PCR |
PCR primer forward |
SK 29 |
18 |
105 |
ACTAGGGAACCCACTGCT |
501-518 |
5'LTR |
ACUAGGGAACCCACUGCU |
625-639 |
42 |
13.33 |
40.00 |
94.55 |
49.30 |
8 |
HIV1ID0039
|
PCR |
PCR primer reverse |
SK 30 |
17 |
|
GGTCTGAGGGATCTCTA |
589-605 |
5'LTR |
UAGAGAUCCCUCAGACC |
736-752 |
61 |
52.94 |
40.00 |
97.53 |
63.49 |
8 |
HIV1ID0040
|
PCR |
Probe |
SK 31 |
34 |
|
ACCAGAGTCACACAACAGACGGGCACACAC(...) |
552-585 |
5'LTR |
AGUAGUGUGUGCCCGUCUGUUGUGUGACUC(...) |
684-709 |
61 |
0.00 |
0.00 |
93.09 |
31.03 |
8 |
HIV1ID0041
|
PCR |
PCR primer forward |
SK 68 |
20 |
142 |
AGCAGCAGGAAGCACTATGG |
7796-7815 |
env |
AGCAGCAGGAAGCACUAUGG |
8860-8879 |
170 |
25.00 |
40.00 |
96.74 |
53.91 |
8 |
HIV1ID0042
|
PCR |
PCR primer reverse |
SK 69 |
21 |
|
CCAGACTGTGAGTTGCAACAG |
7917-7937 |
env |
CUGUUGCAACUCACAGUCUGG |
8981-9001 |
170 |
19.05 |
0.00 |
90.23 |
36.42 |
8 |
HIV1ID0043
|
PCR |
Probe |
SK 70 |
35 |
|
ACGGTACAGGCCAGACAATTATTGTCTGGT(...) |
7836-7870 |
env |
ACGGUACAGGCCAGACAAUUAUUGUCUGGU(...) |
8900-8934 |
170 |
34.29 |
60.00 |
93.56 |
62.62 |
8 |
HIV1ID0044
|
PCR |
PCR primer forward |
CO1 |
20 |
135 |
ACAATTATTGTCTGGTATAG |
7850-7869 |
env |
ACAAUUAUUGUCUGGUAUAG |
8914-8933 |
170 |
30.00 |
60.00 |
91.07 |
60.36 |
8 |
HIV1ID0045
|
PCR |
PCR primer reverse |
CO2 |
20 |
|
AGGTATCTTTCCACAGCCAG |
7965-7984 |
env |
CUGGCUGUGGAAAGAUACCU |
9029-9048 |
170 |
15.00 |
20.00 |
92.21 |
42.40 |
8 |
HIV1ID0046
|
Recombinase Polymerase Amplifi(...) |
Primer forward |
gag F1 |
32 |
|
TCACCTAGAACTTTAAATGCATGGGTAAAA(...) |
1231-1262 |
gag |
UCACCUAGAACUUUAAAUGCAUGGGUAAAA(...) |
1606-1637 |
170 |
34.38 |
60.00 |
91.98 |
62.12 |
20 |
HIV1ID0047
|
Recombinase Polymerase Amplifi(...) |
Primer forward |
gag F2 |
32 |
|
AATGCATGGGTAAAAGTAGTAGAAGAGAAG(...) |
1246-1277 |
gag |
AAUGCAUGGGUAAAAGUAGUAGAAGAGAAG(...) |
1621-1652 |
170 |
37.50 |
20.00 |
90.35 |
49.28 |
20 |
HIV1ID0048
|
Recombinase Polymerase Amplifi(...) |
Primer forward |
gag F3 |
32 |
|
AAGGCTTTCAGCCCAGAAGTGATACCCATG(...) |
1273-1304 |
gag |
AAGGCUUUCAGCCCAGAAGUGAUACCCAUG(...) |
1648-1679 |
170 |
34.38 |
40.00 |
92.58 |
55.65 |
20 |
HIV1ID0049
|
Recombinase Polymerase Amplifi(...) |
Primer reverse |
gag R1 |
32 |
|
TATTTGTTCCTGAAGGGTACTAGTAGTTCC(...) |
1499-1530 |
gag |
CAGGAACUACUAGUACCCUUCAGGAACAAA(...) |
1874-1905 |
170 |
31.25 |
40.00 |
92.68 |
54.64 |
20 |
HIV1ID0050
|
Recombinase Polymerase Amplifi(...) |
Primer reverse |
gag R2 |
32 |
|
TACTAGTAGTTCCTGCTATGTCACTTCCCC(...) |
1482-1513 |
gag |
AAGGGGAAGUGACAUAGCAGGAACUACUAG(...) |
1857-1888 |
170 |
40.62 |
40.00 |
94.15 |
58.26 |
20 |
HIV1ID0051
|
Recombinase Polymerase Amplifi(...) |
Primer reverse |
gag R3 |
32 |
|
CCTGCTATGTCACTTCCCCTTGGTTCTCTC(...) |
1471-1502 |
gag |
AUGAGAGAACCAAGGGGAAGUGACAUAGCA(...) |
1846-1877 |
170 |
46.88 |
40.00 |
92.72 |
59.87 |
20 |
HIV1ID0052
|
Recombinase Polymerase Amplifi(...) |
Primer reverse |
gag R4 |
32 |
|
TTGATGGTCTCTTTTAACATTTGCATGGCT(...) |
1375-1406 |
gag |
GCAGCCAUGCAAAUGUUAAAAGAGACCAUC(...) |
1750-1781 |
170 |
56.25 |
80.00 |
92.30 |
76.18 |
20 |
HIV1ID0053
|
Recombinase Polymerase Amplifi(...) |
Primer reverse |
gag R44 |
32 |
|
CCCATTCTGCAGCTTCCTCATTGATGGTCT(...) |
1396-1426 |
gag |
GAGACCAUCAAUGAGGAAGCUGCAGAAUGG(...) |
1771-1801 |
170 |
54.84 |
80.00 |
93.15 |
76.00 |
20 |
HIV1ID0054
|
Recombinase Polymerase Amplifi(...) |
Primer reverse |
gag R45 |
32 |
|
TCATTGATGGTCTCTTTTAACATTTGCATG(...) |
1378-1409 |
gag |
GCCAUGCAAAUGUUAAAAGAGACCAUCAAU(...) |
1753-1784 |
170 |
56.25 |
60.00 |
92.30 |
69.52 |
20 |
HIV1ID0055
|
Recombinase Polymerase Amplifi(...) |
Primer forward |
LTR F2 |
33 |
|
CATATAAGCAGCTGCTTTTTGCCTGTACTG(...) |
425-457 |
LTR |
CAUAUAAGCAGCUGCUUUUUGCCUGUACUG(...) |
540-572 |
35 |
6.06 |
40.00 |
90.67 |
45.58 |
20 |
HIV1ID0056
|
Recombinase Polymerase Amplifi(...) |
Primer forward |
LTR F3 |
31 |
|
CCTGTACTGGGTCTCTCTGGTTAGACCAGA(...) |
446-476 |
LTR |
CCUGUACUGGGUCUCUCUGGUUAGACCAGA(...) |
561-593 |
36 |
12.12 |
60.00 |
90.71 |
54.28 |
20 |
HIV1ID0057
|
Recombinase Polymerase Amplifi(...) |
Primer forward |
LTR F4 |
34 |
|
CTGGGTCTCTCTGGTTAGACCAGATTTGAG(...) |
452-485 |
LTR |
CUGGGUCUCUCUGGUUAGACCAGAUCUGAG(...) |
567-602 |
39 |
0.00 |
0.00 |
89.69 |
29.90 |
20 |
HIV1ID0058
|
Recombinase Polymerase Amplifi(...) |
Primer forward |
LTR F5 |
33 |
|
TTAGACCAGATTTGAGCCTGGGAGCTCTCT(...) |
466-498 |
LTR |
UUAGACCAGAUCUGAGCCUGGGAGCUCUCU(...) |
586-615 |
40 |
13.33 |
40.00 |
92.99 |
48.77 |
20 |
HIV1ID0059
|
Recombinase Polymerase Amplifi(...) |
Primer forward |
LTR F6 |
32 |
|
CCTGGGAGCTCTCTGGCTAACTAGGGAACC(...) |
482-513 |
LTR |
CCUGGGAGCUCUCUGGCUAACUAGGGAACC(...) |
599-634 |
40 |
30.56 |
100.00 |
89.96 |
73.51 |
20 |
HIV1ID0060
|
Recombinase Polymerase Amplifi(...) |
Primer reverse |
LTR R1 |
30 |
|
CCCTGTTCGGGCGCCACTGCTAGAGATTTT |
622-651 |
LTR |
AAAAUCUCUAGCAGUGGCGCCCGAACAGGG |
787-806 |
80 |
5.00 |
0.00 |
96.85 |
33.95 |
20 |
HIV1ID0061
|
Recombinase Polymerase Amplifi(...) |
Primer reverse |
LTR R2 |
33 |
|
TCTGAGGGATCTCTAGTTACCAGAGTCACA(...) |
571-603 |
LTR |
UUGUGUGACUCUGGUAACUAGAGAUCCCUC(...) |
725-750 |
61 |
53.85 |
20.00 |
97.48 |
57.11 |
20 |
HIV1ID0062
|
Recombinase Polymerase Amplifi(...) |
Primer reverse |
LTR R3 |
32 |
|
ATCTCTAGTTACCAGAGTCACACAACAGAC(...) |
564-595 |
LTR |
CCGUCUGUUGUGUGACUCUGGUAACUAGAG(...) |
725-742 |
61 |
44.44 |
20.00 |
96.88 |
53.77 |
20 |
HIV1ID0063
|
Recombinase Polymerase Amplifi(...) |
Primer reverse |
LTR R4 |
32 |
|
CCAGAGTCACACAACAGACGGGCACACACT(...) |
553-584 |
LTR |
GUAGUGUGUGCCCGUCUGUUGUGUGACUCU(...) |
684-709 |
61 |
0.00 |
0.00 |
93.09 |
31.03 |
20 |
HIV1ID0064
|
Recombinase Polymerase Amplifi(...) |
Primer forward |
pol F1 |
33 |
|
CCCTACAATCCCCAAAGTCAAGGAGTAGTA(...) |
4653-4685 |
pol |
CCCUACAAUCCCCAAAGUCAAGGAGUAGUA(...) |
5243-5275 |
170 |
48.48 |
20.00 |
94.88 |
54.45 |
20 |
HIV1ID0065
|
Recombinase Polymerase Amplifi(...) |
Primer forward |
pol F2 |
33 |
|
CCCAAAGTCAAGGAGTAGTAGAATCTATGA(...) |
4663-4695 |
pol |
CCCAAAGUCAAGGAGUAGUAGAAUCUAUGA(...) |
5253-5285 |
170 |
45.45 |
60.00 |
94.04 |
66.50 |
20 |
HIV1ID0066
|
Recombinase Polymerase Amplifi(...) |
Primer forward |
pol F3 |
34 |
|
TAGTAGAATCTATGAATAAAGAATTAAAGA(...) |
4678-4711 |
pol |
UAGUAGAAUCUAUGAAUAAAGAAUUAAAGA(...) |
5268-5301 |
170 |
17.65 |
0.00 |
92.85 |
36.83 |
20 |
HIV1ID0067
|
Recombinase Polymerase Amplifi(...) |
Primer forward |
pol F4 |
33 |
|
ACAGCAGTACAAATGGCAGTATTCATCCAC(...) |
4749-4781 |
pol |
ACAGCAGUACAAAUGGCAGUAUUCAUCCAC(...) |
5339-5371 |
170 |
39.39 |
60.00 |
96.16 |
65.18 |
20 |
HIV1ID0068
|
Recombinase Polymerase Amplifi(...) |
Primer forward |
pol F5 |
34 |
|
TGGCAGTATTCATTCACAATTTTAAAAGAA(...) |
4762-4795 |
pol |
UGGCAGUAUUCAUCCACAAUUUUAAAAGAA(...) |
5352-5385 |
170 |
35.29 |
40.00 |
96.64 |
57.31 |
20 |
HIV1ID0069
|
Recombinase Polymerase Amplifi(...) |
Primer reverse |
pol R1 |
32 |
|
TGTATTACTACTGCCCCTTCACCTTTCCAG(...) |
4953-4984 |
pol |
CUCUGGAAAGGUGAAGGGGCAGUAGUAAUA(...) |
5544-5575 |
170 |
50.00 |
40.00 |
97.07 |
62.36 |
20 |
HIV1ID0070
|
Recombinase Polymerase Amplifi(...) |
Primer reverse |
pol R2 |
31 |
|
CTGTAATAAACCCGAAAATTTTGAATTTTT(...) |
4882-4912 |
pol |
CAAAAAUUCAAAAUUUUCGGGUUUAUUACA(...) |
5473-5503 |
170 |
32.26 |
20.00 |
95.43 |
49.23 |
20 |
HIV1ID0071
|
Recombinase Polymerase Amplifi(...) |
Primer reverse |
pol R3 |
34 |
|
CCCGAAAATTTTGAATTTTTGTAATTTGTT(...) |
4869-4902 |
pol |
CAAAAACAAAUUACAAAAAUUCAAAAUUUU(...) |
5460-5493 |
170 |
29.41 |
40.00 |
94.79 |
54.73 |
20 |
HIV1ID0072
|
Recombinase Polymerase Amplifi(...) |
Primer reverse |
pol R4 |
33 |
|
TAATTCTTTAGTTTGTATGTCTGTTGCTAT(...) |
4836-4868 |
pol |
AUAAUAGCAACAGACAUACAAACUAAAGAA(...) |
5427-5459 |
170 |
30.30 |
0.00 |
93.23 |
41.18 |
20 |
HIV1ID0073
|
Taqman real-time quantative PC(...) |
Primer forward |
polP1 |
19 |
199 |
TGGCATGGGTACCAGCACA |
4147-4165 |
pol |
UGGCAUGGGUACCAGCACA |
4731-4749 |
170 |
52.63 |
80.00 |
94.47 |
75.70 |
21 |
HIV1ID0074
|
Taqman real-time quantative PC(...) |
Primer reverse |
polP2 |
22 |
|
CTGGCTACTATTTCTTTTGCTA |
4324-4345 |
pol |
UAGCAAAAGAAAUAGUAGCCAG |
4911-4932 |
170 |
36.36 |
40.00 |
91.94 |
56.10 |
21 |
HIV1ID0075
|
Taqman real-time quantative PC(...) |
Probe |
polprobe |
32 |
|
TTTATCTACTTGTTCATTTCCTCCAATTCC(...) |
4168-4199 |
pol |
AAGGAAUUGGAGGAAAUGAACAAGUAGAUA(...) |
4752-4783 |
170 |
37.50 |
40.00 |
94.84 |
57.45 |
21 |
HIV1ID0076
|
Taqman real-time quantative PC(...) |
Primer forward |
gagFW |
25 |
166 |
TTAAGTGTTTCAATTGTGGCAAAGA |
1958-1982 |
gag |
UUAAGUGUUUCAAUUGUGGCAAAGA |
2375-2399 |
170 |
36.00 |
20.00 |
89.96 |
48.65 |
21 |
HIV1ID0077
|
Taqman real-time quantative PC(...) |
Primer reverse |
gagRW |
30 |
|
AAAAAATTAGCCTGTCTCTCAGTACAATCT |
2061-2090 |
gag |
AGAUUGUACUGAGAGACAGGCUAAUUUUUU |
2499-2519 |
170 |
9.52 |
0.00 |
94.74 |
34.75 |
21 |
HIV1ID0078
|
Taqman real-time quantative PC(...) |
Probe |
gagprobe |
27 |
|
CCCTAGGAAAAAGGGCTGTTGGAAATG |
2010-2036 |
gag |
CCCUAGGAAAAAGGGCUGUUGGAAAUG |
2427-2453 |
170 |
33.33 |
40.00 |
92.86 |
55.40 |
21 |
HIV1ID0079
|
Sequencing |
Primer forward |
G00 |
19 |
|
GACTAGCGGAGGCTAGAAG |
764-782 |
gag |
GACUAGCGGAGGCUAGAAG |
1041-1051 |
102 |
36.36 |
60.00 |
98.12 |
64.83 |
15 |
HIV1ID0080
|
Sequencing |
Primer forward |
G10 |
22 |
|
CAGTATTAAGCGGGGGAGAATT |
806-827 |
gag |
CAGUAUUAAGCGGGGGAGAAUU |
1104-1125 |
168 |
9.09 |
0.00 |
88.21 |
32.43 |
15 |
HIV1ID0081
|
Sequencing |
Primer forward |
G20 |
24 |
|
GTATGGGCAAGCAGGGAGCTAGAA |
892-915 |
gag |
GUAUGGGCAAGCAGGGAGCUAGAA |
1190-1213 |
170 |
33.33 |
20.00 |
92.82 |
48.72 |
15 |
HIV1ID0082
|
Sequencing |
Primer forward |
G30 |
22 |
|
CAGTAGCAACCCTCTATTGTGT |
1031-1052 |
gag |
CAGUAGCAACCCUCUAUUGUGU |
1329-1350 |
170 |
4.55 |
0.00 |
85.50 |
30.01 |
15 |
HIV1ID0083
|
Sequencing |
Primer forward |
G40 |
20 |
|
GACACCAAGGAAGCTTTAGA |
1075-1094 |
gag |
GACACCAAGGAAGCUUUAGA |
1373-1392 |
170 |
35.00 |
0.00 |
92.60 |
42.53 |
15 |
HIV1ID0084
|
Sequencing |
Primer forward |
G50 |
18 |
|
CACAGCAAGCAGCAGCTG |
1133-1150 |
gag |
CACAGCAAGCAGCAGCUG |
1431-1447 |
169 |
0.00 |
0.00 |
76.35 |
25.45 |
15 |
HIV1ID0085
|
Sequencing |
Primer forward |
G60 |
25 |
|
CAGCCAAAATTACCCTATAGTGCAG |
1173-1197 |
gag |
CAGCCAAAAUUACCCUAUAGUGCAG |
1548-1572 |
170 |
32.00 |
20.00 |
90.15 |
47.38 |
15 |
HIV1ID0086
|
Sequencing |
Primer forward |
G70 |
21 |
|
ATGAGGAAGCTGCAGAATGGG |
1406-1426 |
gag |
AUGAGGAAGCUGCAGAAUGGG |
1781-1801 |
170 |
52.38 |
60.00 |
94.75 |
69.04 |
15 |
HIV1ID0087
|
Sequencing |
Primer forward |
G80 |
23 |
|
ATGAGAGAACCAAGGGGAAGTGA |
1471-1493 |
gag |
AUGAGAGAACCAAGGGGAAGUGA |
1846-1868 |
170 |
56.52 |
80.00 |
93.32 |
76.61 |
15 |
HIV1ID0088
|
Sequencing |
Primer forward |
G100 |
18 |
|
TAGAAGAAATGATGACAG |
1817-1834 |
gag |
UAGAAGAAAUGAUGACAG |
2204-2221 |
170 |
44.44 |
40.00 |
98.21 |
60.88 |
15 |
HIV1ID0089
|
Sequencing |
Primer forward |
G110 |
18 |
|
AGGCTAATTTTTTAGGGA |
2078-2095 |
gag |
AGGCUAAUUUUUUAGGGA |
2507-2524 |
170 |
22.22 |
40.00 |
98.32 |
53.51 |
15 |
HIV1ID0090
|
Sequencing |
Primer reverse |
G01 |
18 |
|
AGGGGTCGTTGCCAAAGA |
2264-2281 |
gag |
UCUUUGGCAACGACCCCU |
2837-2854 |
170 |
38.89 |
0.00 |
93.77 |
44.22 |
15 |
HIV1ID0091
|
Sequencing |
Primer reverse |
G05 |
20 |
|
TGTTGGCTCTGGTCTGCTCT |
2138-2157 |
gag |
AGAGCAGACCAGAGCCAACA |
2661-2676 |
19 |
6.25 |
20.00 |
85.39 |
37.21 |
15 |
HIV1ID0092
|
Sequencing |
Primer reverse |
G15 |
22 |
|
CTTTGCCACAATTGAAACACTT |
1960-1981 |
gag |
AAGUGUUUCAAUUGUGGCAAAG |
2377-2398 |
170 |
40.91 |
60.00 |
90.07 |
63.66 |
15 |
HIV1ID0093
|
Sequencing |
Primer reverse |
G25 |
23 |
|
ATTGCTTCAGCCAAAACTCTTGC |
1867-1889 |
gag |
GCAAGAGUUUUGGCUGAAGCAAU |
2254-2276 |
170 |
39.13 |
80.00 |
89.96 |
69.70 |
15 |
HIV1ID0094
|
Sequencing |
Primer reverse |
G35 |
22 |
|
CATGCTGTCATCATTTCTTCTA |
1817-1838 |
gag |
UAGAAGAAAUGAUGACAGCAUG |
2204-2225 |
170 |
40.91 |
40.00 |
98.16 |
59.69 |
15 |
HIV1ID0095
|
Sequencing |
Primer reverse |
G45 |
22 |
|
TTGGACCAACAAGGTTTCTGTC |
1740-1761 |
gag |
GACAGAAACCUUGUUGGUCCAA |
2127-2148 |
170 |
22.73 |
60.00 |
90.03 |
57.59 |
15 |
HIV1ID0096
|
Sequencing |
Primer reverse |
G65 |
18 |
|
ATGCTGAAAACATGGGTA |
1295-1312 |
gag |
UACCCAUGUUUUCAGCAU |
1670-1687 |
170 |
33.33 |
40.00 |
94.09 |
55.81 |
15 |
HIV1ID0097
|
Sequencing |
Primer reverse |
G85 |
20 |
|
TGCACTATAGGGTAATTTTG |
1177-1196 |
gag |
CAAAAUUACCCUAUAGUGCA |
1552-1571 |
170 |
35.00 |
60.00 |
93.20 |
62.73 |
15 |
HIV1ID0098
|
Sequencing |
Primer forward |
E0 |
33 |
|
TAGAGCCCTGGAAGCATCCAGGAAGTCAGC(...) |
5853-5885 |
env |
UAGAGCCCUGGAAGCAUCCAGGAAGUCAGC(...) |
6488-6520 |
170 |
33.33 |
40.00 |
91.06 |
54.80 |
15 |
HIV1ID0099
|
Sequencing |
Primer forward |
E00 |
28 |
|
TAGAAAGAGCAGAAGACAGTGGCAATGA |
6201-6228 |
env |
UAGAAAGAGCAGAAGACAGUGGCAAUGA |
6920-6948 |
170 |
31.03 |
40.00 |
93.23 |
54.75 |
15 |
HIV1ID0100
|
Sequencing |
Primer forward |
E10 |
26 |
|
TTGTGGGTCACAGTCTATTATGGGGT |
6324-6349 |
env |
UUGUGGGUCACAGUCUAUUAUGGGGU |
7068-7093 |
170 |
30.77 |
60.00 |
92.04 |
60.94 |
15 |
HIV1ID0101
|
Sequencing |
Primer forward |
E20 |
27 |
|
GGGCCACACATGCCTGTGTACCCACAG |
6430-6456 |
env |
GGGCCACACAUGCCUGUGUACCCACAG |
7174-7200 |
170 |
29.63 |
20.00 |
94.42 |
48.02 |
15 |
HIV1ID0102
|
Sequencing |
Primer forward |
E30 |
27 |
|
GTGTACCCACAGACCCCAGCCCACAAG |
6445-6471 |
env |
GUGUACCCACAGACCCCAACCCACAAG |
7189-7215 |
170 |
22.22 |
0.00 |
93.08 |
38.43 |
15 |
HIV1ID0103
|
Sequencing |
Primer forward |
E40 |
27 |
|
CATGTGGAAAAATGACATGGTGGATCA |
6506-6532 |
env |
CAUGUGGAAAAAUGACAUGGUAGAACA |
7253-7279 |
170 |
25.93 |
60.00 |
88.89 |
58.27 |
15 |
HIV1ID0104
|
Sequencing |
Primer forward |
E50 |
26 |
|
CATGGTAGAGCAGATGCAGGAGGATG |
6521-6546 |
env |
CAUGGUAGAACAGAUGCAUGAGGAUA |
7268-7293 |
170 |
38.46 |
40.00 |
85.94 |
54.80 |
15 |
HIV1ID0105
|
Sequencing |
Primer forward |
E60 |
23 |
|
TAATCAGTTTATGGGATCAAAGC |
6547-6569 |
env |
UAAUCAGUUUAUGGGAUCAAAGC |
7294-7311 |
170 |
5.56 |
20.00 |
89.99 |
38.52 |
15 |
HIV1ID0106
|
Sequencing |
Primer forward |
E70 |
27 |
|
GGGATCAAAGCCTAAAGCCATGTGTAA |
6559-6585 |
env |
GGGAUCAAAGCCUAAAGCCAUGUGUAA |
7315-7335 |
170 |
14.29 |
0.00 |
92.91 |
35.73 |
15 |
HIV1ID0107
|
Sequencing |
Primer forward |
E80 |
22 |
|
CCAATTCCCATACATTATTGTG |
6858-6879 |
env |
CCAAUUCCCAUACAUUAUUGUG |
7746-7767 |
170 |
27.27 |
20.00 |
93.81 |
47.03 |
15 |
HIV1ID0108
|
Sequencing |
Primer forward |
E90 |
24 |
|
CACAGTACAATGTACACATGGAAT |
6953-6976 |
env |
CACAGUACAAUGUACACAUGGAAU |
7854-7870 |
170 |
41.18 |
40.00 |
94.96 |
58.71 |
15 |
HIV1ID0109
|
Sequencing |
Primer forward |
E100 |
20 |
|
ACACATGGAATTAAGCCAGT |
6966-6985 |
env |
ACACAUGGAAUUAGGCCAGU |
7860-7879 |
170 |
35.00 |
40.00 |
92.79 |
55.93 |
15 |
HIV1ID0110
|
Sequencing |
Primer forward |
E110 |
24 |
|
CTGTTAAATGGCAGTCTAGCAGAA |
7002-7025 |
env |
CUGUUAAAUGGCAGUCUAGCAGAA |
7896-7919 |
170 |
29.17 |
20.00 |
88.29 |
45.82 |
15 |
HIV1ID0111
|
Sequencing |
Primer forward |
E120 |
24 |
|
GTAGAAATTAATTGTACAAGACCC |
7098-7121 |
env |
GUAGAAAUUAAUUGUACAAGACCC |
7995-8018 |
170 |
12.50 |
20.00 |
78.68 |
37.06 |
15 |
HIV1ID0112
|
Sequencing |
Primer forward |
E130 |
23 |
|
ACAAATTATAAACATGTGGCAGG |
7487-7509 |
env |
ACAAAUUAUAAACAUGUGGCAGA |
8479-8502 |
170 |
4.17 |
0.00 |
86.07 |
30.08 |
15 |
HIV1ID0113
|
Sequencing |
Primer forward |
E140 |
24 |
|
GTGAATTATATAAATATAAAGTAG |
7666-7689 |
env |
GUGAAUUAUAUAAAUAUAAAGUAG |
8706-8729 |
170 |
29.17 |
0.00 |
92.16 |
40.44 |
15 |
HIV1ID0114
|
Sequencing |
Primer forward |
E160 |
27 |
|
GTGGGAATAGGAGCTGTGTTCCTTGGG |
7761-7787 |
env |
GUGGGAAUAGGAGCUUUGUUCCUUGGG |
8828-8851 |
169 |
4.17 |
20.00 |
83.02 |
35.73 |
15 |
HIV1ID0115
|
Sequencing |
Primer forward |
E170 |
18 |
|
AGCAGGAAGCACTATGGG |
7799-7816 |
env |
AGCAGGAAGCACUAUGGG |
8863-8880 |
170 |
33.33 |
60.00 |
97.68 |
63.67 |
15 |
HIV1ID0116
|
Sequencing |
Primer forward |
E180 |
20 |
|
GTCTGGTATAGTGCAACAGCA |
7860-7879 |
env |
UCUGGUAUAGUGCAGCAGCA |
8924-8943 |
170 |
60.00 |
80.00 |
95.14 |
78.38 |
15 |
HIV1ID0117
|
Sequencing |
Primer forward |
E210 |
24 |
|
TAACAAATTGGCTGTGGTATATAA |
8248-8271 |
env |
UAACAAAUUGGCUGUGGUAUAUAA |
9342-9365 |
170 |
8.33 |
20.00 |
89.07 |
39.13 |
15 |
HIV1ID0118
|
Sequencing |
Primer forward |
E260 |
25 |
|
TTCAGCTACCACCGCTTGAGAGACT |
8520-8544 |
env |
UUCAGCUACCACCGCUUGAGAGACU |
9640-9664 |
170 |
24.00 |
20.00 |
92.52 |
45.51 |
15 |
HIV1ID0119
|
Sequencing |
Primer forward |
E270 |
20 |
|
GTGGAACTTCTGGGACGCAG |
8568-8587 |
env |
GUGGAACUUCUGGGACGCAG |
9709-9726 |
170 |
0.00 |
0.00 |
89.87 |
29.96 |
15 |
HIV1ID0120
|
Sequencing |
Primer reverse |
E01 |
26 |
|
TCCAGTCCCCCCTTTTCTTTTAAAAA |
9064-9089 |
env |
UUUUUAAAAGAAAAGGGGGGACUGGA |
10311-10336 |
164 |
3.85 |
0.00 |
98.11 |
33.99 |
15 |
HIV1ID0121
|
Sequencing |
Primer reverse |
E03 |
26 |
|
TAAGTCATTGGTCTTAAAGGTACCTG |
9013-9038 |
env |
CAGGUACCUUUAAGACCAAUGACUUA |
10257-10285 |
164 |
17.24 |
20.00 |
89.52 |
42.26 |
15 |
HIV1ID0122
|
Sequencing |
Primer reverse |
E05 |
22 |
|
TATTTGAGGGCTTCCCACCCCC |
8587-8608 |
env |
GGGGGUGGGAAGCCCUCAAAUA |
9749-9770 |
170 |
9.09 |
0.00 |
84.44 |
31.18 |
15 |
HIV1ID0123
|
Sequencing |
Primer reverse |
E15 |
22 |
|
CTCTCTCTCCACCTTCTTCTTC |
8424-8445 |
env |
GAAGAAGAAGGUGGAGAGAGAG |
9533-9556 |
170 |
4.17 |
0.00 |
90.37 |
31.51 |
15 |
HIV1ID0124
|
Sequencing |
Primer reverse |
E45 |
19 |
|
CCTGCCTAACTCTATTCAC |
8337-8355 |
env |
GUGAAUAGAGUUAGGCAGG |
9431-9449 |
170 |
15.79 |
0.00 |
91.40 |
35.73 |
15 |
HIV1ID0125
|
Sequencing |
Primer reverse |
E55 |
27 |
|
GCCCCAGACTGTGAGTTGCAACAGATG |
7914-7940 |
env |
CAUCUGUUGCAACUCACAGUCUGGGGC |
8978-9004 |
170 |
25.93 |
20.00 |
91.49 |
45.81 |
15 |
HIV1ID0126
|
Sequencing |
Primer reverse |
E65 |
18 |
|
AGTGCTTCCTGCTGCTCC |
7794-7811 |
env |
GGAGCAGCAGGAAGCACU |
8858-8875 |
170 |
16.67 |
0.00 |
95.74 |
37.47 |
15 |
HIV1ID0127
|
Sequencing |
Primer reverse |
E75 |
27 |
|
GCGCCCATAGTGCTTCCTGCTGCTCCC |
7793-7819 |
env |
GGGAGCAGCAGGAAGCACUAUGGGCGC |
8857-8883 |
170 |
29.63 |
0.00 |
95.32 |
41.65 |
15 |
HIV1ID0128
|
Sequencing |
Primer reverse |
E85 |
27 |
|
GTCCCTCATATCTCCTCCTCCAGGTCT |
7629-7655 |
env |
AGACCUGGAGGAGGAGAUAUGAGGGAC |
8669-8695 |
170 |
25.93 |
0.00 |
88.96 |
38.29 |
15 |
HIV1ID0129
|
Sequencing |
Primer reverse |
E95 |
18 |
|
GATGGGAGGGGCATACAT |
7524-7541 |
env |
AUGUAUGCCCCUCCCAUC |
8522-8539 |
170 |
16.67 |
0.00 |
90.06 |
35.58 |
15 |
HIV1ID0130
|
Sequencing |
Primer reverse |
E105 |
21 |
|
GCTTTTCCTACTTCCTGCCAC |
7512-7532 |
env |
GUAGGAAAAGCAAUGUAUGCC |
8510-8530 |
170 |
4.76 |
0.00 |
88.79 |
31.18 |
15 |
HIV1ID0131
|
Sequencing |
Primer reverse |
E115 |
24 |
|
AGAAAAATTCCCCTCCACAATTAA |
7351-7374 |
env |
UUAAUUGUGGAGGGGAAUUUUUCU |
8313-8336 |
170 |
16.67 |
0.00 |
91.48 |
36.05 |
15 |
HIV1ID0132
|
Sequencing |
Primer reverse |
E125 |
24 |
|
CAATTTCTGGGTCCCCTCCTGAGG |
7315-7338 |
env |
CCUCAGGAGGGGACCCAGAAAUUG |
8279-8300 |
170 |
31.82 |
40.00 |
86.47 |
52.76 |
15 |
HIV1ID0133
|
Sequencing |
Primer reverse |
E135 |
28 |
|
AGCTGTACTATTATGGTTTTAGCATTGT |
7060-7087 |
env |
ACAAUGCUAAAACCAUAAUAGUACAGCU |
7957-7984 |
170 |
14.29 |
20.00 |
84.56 |
39.62 |
15 |
HIV1ID0134
|
Sequencing |
Primer reverse |
E145 |
24 |
|
CAGCAGTTGAGTTGATACTACTGG |
6981-7004 |
env |
CCAGUAGUAUCAACUCAACUGCUG |
7875-7898 |
170 |
25.00 |
40.00 |
88.20 |
51.07 |
15 |
HIV1ID0135
|
Sequencing |
Primer reverse |
E165 |
27 |
|
GGGGTCTGTGGGTACACAGGCATGTGT |
6435-6461 |
env |
ACACAUGCCUGUGUACCCACAGACCCC |
7179-7205 |
170 |
18.52 |
20.00 |
94.39 |
44.30 |
15 |
HIV1ID0136
|
Sequencing |
Primer reverse |
E175 |
24 |
|
TTTAGCATCTGATGCACAAAATAG |
6378-6401 |
env |
CUAUUUUGUGCAUCAGAUGCUAAA |
7122-7145 |
170 |
20.83 |
0.00 |
92.80 |
37.88 |
15 |
HIV1ID0137
|
cDNA synthesis |
Degenerated primer forward |
GAG2FWD |
21 |
|
RGAYATAARRCARGGRCCAAA |
1638-1658 |
gag |
GGACAUAAGACAAGGACCAAA |
2025-2045 |
170 |
52.38 |
80.00 |
92.52 |
74.97 |
22 |
HIV1ID0138
|
cDNA synthesis |
Degenerated primer reverse |
GAG2REV |
22 |
|
CTTKCCACAYTTCCARCARCCC |
2022-2043 |
gag |
GGGCUGUUGGAAAUGUGGAAAG |
2439-2460 |
170 |
18.18 |
20.00 |
91.50 |
43.23 |
22 |
HIV1ID0139
|
Nested PCR |
Degenerated primer reverse |
M/Op24-7 |
18 |
|
CCCTGRCAKGCTYCATCA |
1834-1851 |
gag |
GCAUGUCAGGGAGUAGGA |
2221-2238 |
170 |
33.33 |
20.00 |
93.85 |
49.06 |
23 |
HIV1ID0140
|
Nested PCR |
Degenerated primer forward |
M/Op24-1 |
20 |
|
AGYCAAAATTWYCCYATAGT |
1174-1193 |
gag |
AGCCAAAAUUACCCUAUAGU |
1549-1568 |
170 |
35.00 |
20.00 |
92.37 |
49.12 |
23 |
HIV1ID0141
|
Nested PCR |
Degenerated primer forward |
M/Op24-2 |
20 |
|
AGRACYTTRAAYGCATGGGT |
1237-1256 |
gag |
AGAACUUUAAAUGCAUGGGU |
1612-1631 |
170 |
35.00 |
40.00 |
92.39 |
55.80 |
23 |
HIV1ID0142
|
Nested PCR |
Degenerated primer reverse |
M/Op24-6 |
19 |
|
TGTGWAGCTTGYTCRGCTC |
1703-1721 |
gag |
GAGCCGAGCAAGCUUCACA |
2090-2108 |
170 |
42.11 |
40.00 |
88.07 |
56.73 |
23 |
HIV1ID0143
|
Nested PCR |
Degenerated primer reverse |
M/Op24-4 |
19 |
|
ATKTCTCCYACTGGRAYAG |
1553-1571 |
gag |
CUAUCCCAGUAGGAGAAAU |
1940-1958 |
170 |
36.84 |
0.00 |
88.97 |
41.94 |
23 |
HIV1ID0144
|
Nested PCR |
Degenerated primer reverse |
JH38 |
20 |
|
GGTGARTATCCCTKCCTAAC |
8346-8365 |
env |
GUUAGGCAGGGAUAUUCACC |
9440-9459 |
170 |
35.00 |
40.00 |
95.88 |
56.96 |
23 |
HIV1ID0145
|
Nested PCR |
Degenerated primer forward |
JH41 |
19 |
|
CAGCAGGAAGCACUAUGGG |
7798-7816 |
env |
CAGCAGGAAGCACUAUGGG |
8862-8880 |
170 |
31.58 |
60.00 |
97.68 |
63.09 |
23 |
HIV1ID0146
|
Nested PCR |
Degenerated primer forward |
env27F |
19 |
|
CTGGYATAGTGCARCARCA |
7861-7879 |
env |
CUGGUAUAGUGCAGCAGCA |
8925-8943 |
170 |
63.16 |
80.00 |
95.13 |
79.43 |
23 |
HIV1ID0147
|
Nested PCR |
Degenerated primer reverse |
menv19R |
22 |
|
AARCCTCCTACTATCATTATRA |
8278-8299 |
env |
UCAUAAUGAUAGUAGGAGGCUU |
9372-9393 |
170 |
9.09 |
0.00 |
92.45 |
33.85 |
23 |
HIV1ID0148
|
Nested PCR |
Degenerated primer forward |
JH37 |
19 |
|
GTCTGGGGCATYAARCAGC |
7932-7950 |
env |
GUCUGGGGCAUCAAGCAGC |
8996-9014 |
170 |
42.11 |
60.00 |
94.70 |
65.60 |
23 |
HIV1ID0149
|
Nested PCR |
Degenerated primer forward |
menv17F |
20 |
|
TYAARCAGCTCCAGRCAAGA |
7942-7961 |
env |
UCAAGCAGCUCCAGGCAAGA |
9006-9025 |
170 |
40.00 |
40.00 |
93.48 |
57.83 |
23 |
HIV1ID0150
|
Nested PCR |
Degenerated primer reverse |
JH42 |
20 |
|
CCAAYTCCACARAYTTKCCC |
8221-8240 |
env |
GGGCAAGUUUGUGGAAUUGG |
9315-9334 |
170 |
15.00 |
20.00 |
85.75 |
40.25 |
23 |
HIV1ID0151
|
Multiplex real-time PCR & Flow(...) |
Probe |
SK102 |
33 |
|
GAGACCATCAATGAGGAAGCTGCAGAATGG(...) |
1396-1428 |
gag |
GAGACCAUCAAUGAGGAAGCUGCAGAAUGG(...) |
1771-1803 |
170 |
54.55 |
80.00 |
92.04 |
75.53 |
7 |
HIV1ID0152
|
Multiplex real-time PCR & Flow(...) |
Primer forward |
SK431 |
27 |
|
TGCTATGTCAGTTCCCCTTGGTTCTCT |
1491-1517 |
gag |
UGACAUAGCAGGAACUACUAGUACCCU |
1866-1892 |
170 |
29.63 |
0.00 |
92.92 |
40.85 |
7 |
HIV1ID0153
|
One-step RT-PCR |
Primer forward |
Pan-HIV-1_1F |
17 |
1928 |
AGCCYGGGAGCTCTCTG |
480-496 |
LTR |
AGCCUGGGAGCUCUCUG |
597-613 |
40 |
23.53 |
60.00 |
96.24 |
59.92 |
24 |
HIV1ID0154
|
One-step RT-PCR |
Primer reverse |
Pan-HIV-1_1R |
23 |
|
CCTCCAATTCCYCCTATCATTTT |
2385-2407 |
pol |
AAAAUGAUAGGGGGAAUUGGAGG |
2961-2983 |
170 |
26.09 |
0.00 |
96.83 |
40.97 |
24 |
HIV1ID0155
|
One-step RT-PCR |
Primer forward |
Pan-HIV-1_2F |
21 |
3574 |
GGGAAGTGAYATAGCWGGAAC |
1485-1505 |
gag |
GGGAAGUGACAUAGCAGGAAC |
1860-1880 |
170 |
42.86 |
40.00 |
94.55 |
59.14 |
24 |
HIV1ID0156
|
One-step RT-PCR |
Primer reverse |
Pan-HIV-1_2R |
22 |
|
CTGCCATCTGTTTTCCATARTC |
5037-5058 |
pol |
GAUUAUGGAAAACAGAUGGCAG |
5628-5649 |
170 |
54.55 |
40.00 |
97.67 |
64.07 |
24 |
HIV1ID0157
|
One-step RT-PCR |
Primer forward |
Pan-HIV-1_3F |
23 |
3066 |
TTAAAAGAAAAGGGGGGATTGGG |
4783-4805 |
pol |
UUAAAAGAAAAGGGGGGAUUGGG |
5373-5396 |
170 |
45.83 |
40.00 |
98.40 |
61.41 |
24 |
HIV1ID0158
|
One-step RT-PCR |
Primer reverse |
Pan-HIV-1_3R |
18 |
|
TGGCYTGTACCGTCAGCG |
7831-7848 |
env |
CGCUGACGGUACAGGCCA |
8895-8912 |
170 |
44.44 |
40.00 |
97.22 |
60.55 |
24 |
HIV1ID0159
|
One-step RT-PCR |
Primer forward |
Pan-HIV-1_4F |
19 |
3551 |
CCTATGGCAGGAAGAAGCG |
5967-5985 |
env |
CCUAUGGCAGGAAGAAGCG |
6617-6635 |
170 |
57.89 |
60.00 |
97.26 |
71.72 |
24 |
HIV1ID0160
|
One-step RT-PCR |
Primer reverse |
Pan-HIV-1_4R |
21 |
|
CTTWTATGCAGCWTCTGAGGG |
9497-9517 |
LTR |
CCCUCAGAUCCUGCAUAUAAG |
532-547 |
31 |
56.25 |
20.00 |
93.24 |
56.50 |
24 |
HIV1ID0161
|
PCR |
Primer forward |
RU5F |
20 |
170 |
TTAAGCCTCAATAAAGCTTG |
518-537 |
LTR |
UUAAGCCUCAAUAAAGCUUG |
639-656 |
45 |
16.67 |
40.00 |
94.08 |
50.25 |
25 |
HIV1ID0162
|
PCR |
Primer reverse |
RU5R |
26 |
|
GCGCCACTGCTAGAGATTTTCCACAC |
616-641 |
LTR |
GUGUGGAAAAUCUCUAGCAGUGGCGC |
766-796 |
79 |
0.00 |
0.00 |
88.20 |
29.40 |
25 |
HIV1ID0163
|
PCR |
Primer forward |
intF |
20 |
425 |
CCCTACAATCCCCAAAGTCA |
4653-4672 |
pol |
CCCUACAAUCCCCAAAGUCA |
5243-5262 |
170 |
60.00 |
80.00 |
96.62 |
78.87 |
25 |
HIV1ID0164
|
PCR |
Primer reverse |
intR |
20 |
|
CTTGCCACACAATCATCACC |
5058-5077 |
pol |
GGUGAUGAUUGUGUGGCAAG |
5649-5668 |
170 |
30.00 |
20.00 |
94.56 |
48.19 |
25 |
HIV1ID0165
|
PCR |
Primer forward |
tatF |
20 |
118 |
GAAGCATCCAGGAAGTCAGC |
5863-5882 |
env |
GAAGCAUCCAGGAAGUCAGC |
6498-6517 |
170 |
40.00 |
20.00 |
88.71 |
49.57 |
25 |
HIV1ID0166
|
PCR |
Primer reverse |
tatR |
20 |
|
CTTCCTGCCATAGGAGATGC |
5961-5980 |
env |
GCAUCUCCUAUGGCAGGAAG |
6611-6630 |
170 |
45.00 |
20.00 |
95.28 |
53.43 |
25 |
HIV1ID0167
|
PCR |
Primer forward |
vprF |
19 |
162 |
AACAAGCCCCAGAAGACCA |
5563-5581 |
env |
AACAAGCCCCAGAAGACCA |
6178-6196 |
170 |
31.58 |
60.00 |
93.63 |
61.74 |
25 |
HIV1ID0168
|
PCR |
Primer reverse |
vprR |
19 |
|
CTGCCCAAGTATCCCCATA |
5706-5724 |
env |
UAUGGGGAUACUUGGGCAG |
6322-6340 |
170 |
31.58 |
60.00 |
89.00 |
60.19 |
25 |
HIV1ID0169
|
Real-time PCR |
Primer reverse |
B3 |
21 |
|
CCTACATACAAATCATCCATG |
3098-3118 |
pol |
CAUGGAUGAUUUGUAUGUAGG |
3677-3697 |
170 |
28.57 |
20.00 |
92.93 |
47.17 |
26 |
HIV1ID0170
|
Real-time PCR |
Primer reverse |
F3 |
21 |
|
AGTTCCCTTAGATAAAGACTT |
2900-2920 |
pol |
AGUUCCCUUAGAUGAAGACUU |
3479-3499 |
170 |
9.52 |
20.00 |
83.08 |
37.54 |
26 |
HIV1ID0171
|
Recombinase Polymerase Amplifi(...) |
Primer reverse |
GAGR1 |
20 |
|
TTATTGTGACGAGGGGTCGC |
2273-2292 |
gag |
ACGACCCCUCGUCACAAUAA |
2846-2865 |
170 |
30.00 |
80.00 |
85.62 |
65.21 |
27 |
HIV1ID0172
|
Real-time PCR |
Primer forward |
5' Repliprimer |
20 |
263 |
CCAGGAAGATGGAAACCAAA |
2367-2386 |
pol |
CCAGGAAGAUGGAAACCAAA |
2943-2962 |
170 |
35.00 |
40.00 |
95.19 |
56.73 |
28 |
HIV1ID0173
|
Real-time PCR |
Primer reverse |
3' Repliprimer |
20 |
|
GTCAATGGCCATTGTTTAAC |
2610-2629 |
pol |
GUUAAACAAUGGCCAUUGAC |
3189-3208 |
170 |
40.00 |
20.00 |
94.82 |
51.61 |
28 |
HIV1ID0174
|
Real-time PCR |
Probe |
Repliprobe |
24 |
|
TGTCTTACTTTGATAAAACCTCC |
2403-2426 |
pol |
GGAGGUUUUAUCAAAGUAAGACAG |
2979-3002 |
170 |
29.17 |
40.00 |
92.44 |
53.87 |
28 |
HIV1ID0175
|
PCR |
Primer forward |
AV1O |
30 |
|
TGTGACTCTGGTAACTAGAGATCCCTCAGA |
574-603 |
LTR |
UGUGACUCUGGUAACUAGAGAUCCCUCAGA |
725-750 |
61 |
53.85 |
60.00 |
97.48 |
70.44 |
29 |
HIV1ID0176
|
PCR |
Primer forward |
AV11 |
15 |
|
TCTAGCAGTGGCGCC |
628-642 |
LTR |
UCUAGCAGUGGCGCC |
787-797 |
78 |
9.09 |
0.00 |
95.68 |
34.92 |
29 |
HIV1ID0177
|
PCR |
Primer reverse |
AV12 |
15 |
|
GACGCTCTCGCACCC |
792-806 |
gag |
GGGUGCGAGAGCGUC |
1090-1104 |
168 |
13.33 |
20.00 |
98.70 |
44.01 |
29 |
HIV1ID0178
|
PCR |
Primer reverse |
AV13 |
29 |
|
GGCAAGCAGGGAGCTAGAACGATTCGCAG |
897-925 |
gag |
GGCAAGCAGGGAGCUAGAACGAUUCGCAG |
1195-1223 |
170 |
31.03 |
60.00 |
88.34 |
59.79 |
29 |
HIV1ID0179
|
Nested PCR |
Primer forward |
HPOL4235 |
23 |
|
CCCTACAATCCCCAAAGTCAAGG |
4653-4675 |
pol |
CCCUACAAUCCCCAAAGUCAAGG |
5243-5265 |
170 |
60.87 |
80.00 |
95.85 |
78.91 |
30 |
HIV1ID0180
|
Nested PCR |
Primer reverse |
HPOL4538 |
22 |
|
TACTGCCCCTTCACCTTTCCA |
4956-4976 |
pol |
UGGAAAGGUGAAGGGGCAGUA |
5547-5567 |
170 |
61.90 |
60.00 |
98.64 |
73.52 |
30 |
HIV1ID0181
|
Nested PCR |
Primer forward |
HPOL4327 |
23 |
|
TAAGACAGCAGTACAAATGGCAG |
4745-4767 |
pol |
UAAGACAGCAGUACAAAUGGCAG |
5335-5357 |
170 |
39.13 |
60.00 |
96.39 |
65.17 |
30 |
HIV1ID0182
|
Nested PCR |
Primer reverse |
HPOL4481 |
21 |
|
GCTGTCCCTGTAATAAACCCG |
4899-4919 |
pol |
CGGGUUUAUUACAGGGACAGC |
5490-5510 |
170 |
57.14 |
80.00 |
96.57 |
77.90 |
30 |
HIV1ID0183
|
Nested PCR |
Primer forward |
HENV5944 |
26 |
|
GCAACCACCACTCTCTATTTTGTGC |
6366-6391 |
env |
GCAACCACCACUCUAUUUUGUGCAUC |
7110-7135 |
170 |
19.23 |
40.00 |
85.18 |
48.14 |
30 |
HIV1ID0184
|
Nested PCR |
Primer reverse |
HENV6154 |
25 |
|
AGAGTGGGGTTAATTTTACACATGG |
6576-6600 |
env |
CCAUGUGUAAAAUUAACCCCACUCU |
7326-7353 |
170 |
14.29 |
60.00 |
90.02 |
54.77 |
30 |
HIV1ID0185
|
Nested PCR |
Primer forward |
HENV6009 |
20 |
|
GGCCACACATGCCTGTGTAC |
6431-6450 |
env |
GGCCACACAUGCCUGUGUAC |
7175-7194 |
170 |
30.00 |
20.00 |
94.09 |
48.03 |
30 |
HIV1ID0186
|
Nested PCR |
Primer reverse |
HENV6135 |
21 |
|
GGCTTTAGGCTTTGATCCCAT |
6557-6577 |
env |
AUGGGAUCAAAGCCUAAAGCC |
7304-7327 |
170 |
12.50 |
20.00 |
90.37 |
40.96 |
30 |
HIV1ID0187
|
Nested PCR |
Primer forward |
AV18 |
30 |
|
GCACCCACCAAGGCAAAGAGAAGAGTGGTG |
7713-7742 |
env |
GCACCCACCAAGGCAAAGAGAAGAGUGGUG |
8753-8785 |
170 |
21.21 |
20.00 |
88.15 |
43.12 |
29 |
HIV1ID0188
|
Nested PCR |
Primer forward |
AV19 |
16 |
|
AGGAAGCACTATGGGC |
7802-7817 |
env |
AGGAAGCACUAUGGGC |
8866-8881 |
170 |
43.75 |
60.00 |
97.75 |
67.17 |
29 |
HIV1ID0189
|
Nested PCR |
Primer reverse |
AV20 |
16 |
|
GCTGCTTGATGCCCCA |
7935-7950 |
env |
UGGGGCAUCAAGCAGC |
8999-9014 |
170 |
43.75 |
40.00 |
93.92 |
59.22 |
29 |
HIV1ID0190
|
Nested PCR |
Primer reverse |
AV21 |
27 |
|
TCCACAGCCAGGACTCTTGCCTGGAGCTG |
7949-7975 |
env |
GCUCCAGGCAAGAAUCCUGGCUGUGGA |
9013-9039 |
170 |
25.93 |
40.00 |
92.90 |
52.94 |
29 |
HIV1ID0191
|
RT-LAMP |
Primer forward |
p24F3 |
19 |
225 |
ATTATCAGAAGGAGCCACC |
1311-1329 |
gag |
AUUAUCAGAAGGAGCCACC |
1686-1704 |
170 |
31.58 |
20.00 |
92.84 |
48.14 |
31 |
HIV1ID0192
|
RT-LAMP |
Primer reverse |
p24B3 |
21 |
|
CATCCTATTTGTTCCTGAAGG |
1515-1535 |
gag |
CCUUCAGGAACAAAUAGGAUG |
1890-1910 |
170 |
28.57 |
0.00 |
88.25 |
38.94 |
31 |
HIV1ID0193
|
RT-LAMP |
Primer forward |
p24LoopF |
25 |
124 |
TTTAACATTTGCATGGCTGCTTGAT |
1370-1394 |
gag |
AUCAAGCAGCCAUGCAAAUGUUAAA |
1745-1769 |
170 |
56.00 |
40.00 |
91.81 |
62.60 |
31 |
HIV1ID0194
|
RT-LAMP |
Primer reverse |
p24LoopR |
19 |
|
GAGATCCAAGGGGAAGTGA |
1475-1493 |
gag |
GAGAACCAAGGGGAAGUGA |
1850-1868 |
170 |
63.16 |
60.00 |
94.57 |
72.58 |
31 |
HIV1ID0195
|
RT-LAMP |
Primer forward |
proteaseF3 |
18 |
211 |
AAAGATAGGGGGGCAACT |
2291-2308 |
gag |
AAAGAUAGGGGGGCAACU |
2864-2881 |
170 |
16.67 |
0.00 |
81.19 |
32.62 |
31 |
HIV1ID0196
|
RT-LAMP |
Primer reverse |
proteaseB3 |
20 |
|
GTTGACAGGTGTAGGTCCTA |
2482-2501 |
gag |
UAGGACCUACACCUGUCAAC |
3058-3077 |
170 |
50.00 |
40.00 |
94.35 |
61.45 |
31 |
HIV1ID0197
|
RT-LAMP |
Primer forward |
proteaseLoopF |
22 |
95 |
TATTTCTTCTAATACTGTATCA |
2334-2355 |
gag |
GCAGAUGAUACAGUAUUAGAAG |
2907-2928 |
170 |
40.91 |
20.00 |
97.80 |
52.90 |
31 |
HIV1ID0198
|
RT-LAMP |
Primer reverse |
proteaseLoopR |
18 |
|
TATCAAAGTAAGACAGTA |
2411-2428 |
gag |
UAUCAAAGUAAGACAGUA |
2987-3004 |
170 |
27.78 |
20.00 |
92.00 |
46.59 |
31 |
HIV1ID0199
|
Alu-PCR |
Primer forward |
MH531 |
20 |
143 |
TGTGTGCCCGTCTGTTGTGT |
557-576 |
LTR |
UGUGUGCCCGUCUGUUGUGU |
688-708 |
61 |
0.00 |
0.00 |
93.32 |
31.11 |
32 |
HIV1ID0200
|
Alu-PCR |
Primer reverse |
MH532 |
20 |
|
GAGTCCTGCGTCGAGAGAGC |
680-699 |
LTR |
GCUCUCUCGACGCAGGACUC |
896-915 |
96 |
0.00 |
0.00 |
91.60 |
30.53 |
32 |
HIV1ID0201
|
Alu-PCR |
Probe |
LRT-P |
20 |
|
CAGTGGCGCCCGAACAGGGA |
633-652 |
LTR |
CAGUGGCGCCCGAACAGGGA |
788-807 |
80 |
5.00 |
20.00 |
96.83 |
40.61 |
32 |
HIV1ID0202
|
Alu-PCR |
Primer forward |
MH535 |
23 |
|
AACTAGGGAACCCACTGCTTAAG |
500-522 |
LTR |
AACUAGGGAACCCACUGCUUAAG |
625-643 |
43 |
0.00 |
0.00 |
93.78 |
31.26 |
32 |
HIV1ID0203
|
Alu-PCR |
Primer reverse |
MH536 |
24 |
|
TCCACAGATCAAGGATATCTTGTC |
28-51 |
LTR |
GACAAGAUAUCCUUGAUCUGUGGA |
32-53 |
25 |
4.55 |
40.00 |
85.39 |
43.31 |
32 |
HIV1ID0204
|
Alu-PCR |
Probe |
MH603 |
30 |
|
ACACTACTTGAAGCACTCAAGGCAAGCTTT |
530-559 |
LTR |
AAAGCUUGCCUUGAGUGCUUCAAGUAGUGU |
660-690 |
52 |
0.00 |
0.00 |
90.80 |
30.27 |
32 |
HIV1ID0205
|
qRT-PCR |
PCR primer forward |
"HIV-1" |
22 |
|
CCAAAGTAGCATGACAAAAATC |
3029-3050 |
pol |
CCAAAGUAGCAUGACAAAAAUC |
3608-3629 |
170 |
36.36 |
20.00 |
89.11 |
48.49 |
42 |
HIV1ID0206
|
qRT-PCR |
PCR primer reverse |
"HIV-1" |
28 |
|
GTTCATAACCCATCCAAAGGAATGGAGG |
3222-3249 |
pol |
CCUCCAUUCCUUUGGAUGGGUUAUGAAC |
3802-3829 |
170 |
42.86 |
80.00 |
91.73 |
71.53 |
42 |
HIV1ID0207
|
PCR |
Probe |
"Proviral HIV-1" |
26 |
|
AGTAGTGTGTGCCCGTCTGTTTAMRA |
9637-9662 |
LTR |
AGUAGUGUGUGCCCGUCUGUUGUGUG |
11050-11075 |
29 |
0.00 |
0.00 |
57.39 |
19.13 |
43 |
HIV1ID0208
|
PCR |
PCR primer forward |
"Proviral HIV-1" |
22 |
|
GGTCTCTCTGGTTAGACCAGAT |
455-476 |
LTR |
GGUCUCUCUGGUUAGACCAGAU |
570-593 |
36 |
16.67 |
60.00 |
90.06 |
55.58 |
43 |
HIV1ID0209
|
PCR |
PCR primer reverse |
"Proviral HIV-1" |
22 |
|
CTGCTAGAGATTTTCCACACTG |
614-635 |
LTR |
CAGUGUGGAAAAUCUCUAGCAG |
764-776 |
72 |
0.00 |
0.00 |
70.26 |
23.42 |
43 |
HIV1ID0210
|
Site-directed mutagenesis |
PCR primer |
"XS 431V R" |
33 |
|
GAGAGACAGGTTAATTTTTTAGGGAAGATC(...) |
2071-2104 |
gag |
GAGAGACAGGCUAAUUUUUUAGGGAAGAUC(...) |
2500-2533 |
170 |
17.65 |
40.00 |
93.46 |
50.37 |
44 |
HIV1ID0211
|
Site-directed mutagenesis |
PCR primer |
"XS 431V F" |
33 |
|
CCAGATCTTCCCTAAAAAATTAACCTGTCT(...) |
2091-2124 |
gag |
AGGGAAGAUCUGGCCUUCCUACAAGGGAAG(...) |
2520-2543 |
170 |
20.83 |
0.00 |
90.28 |
37.04 |
44 |
HIV1ID0212
|
Site-directed mutagenesis |
PCR primer |
"V18BS 431 AR" |
30 |
|
CCCTAAAAAATTAGCCTGTCTCTCAGTACA |
2065-2094 |
gag |
UGUACUGAGAGACAGGCUAAUUUUUUAGGG |
2499-2523 |
170 |
12.00 |
20.00 |
95.42 |
42.47 |
44 |
HIV1ID0213
|
Site-directed mutagenesis |
PCR primer |
"V18BS 431 AF" |
30 |
|
TGTACTGAGAGACAGGCTAATTTTTTAGGG |
2065-2094 |
gag |
UGUACUGAGAGACAGGCUAAUUUUUUAGGG |
2499-2523 |
170 |
12.00 |
20.00 |
95.42 |
42.47 |
44 |
HIV1ID0214
|
Site-directed mutagenesis |
PCR primer |
"V16XS 437 VR" |
30 |
|
CCTTGTGGGAAGGCCAGACCTTCCCTAAAA |
61-90 |
5'LTR |
CACAAGGCUACUUCCCUGAUUAGCAGAACU |
63-92 |
28 |
10.00 |
40.00 |
88.27 |
46.09 |
44 |
HIV1ID0215
|
Site-directed mutagenesis |
PCR primer |
"V16XS 437 VF" |
30 |
|
TTTTAGGGAAGGTCTGGCCTTCCCACAAGG |
2087-2116 |
gag |
UUUUAGGGAAGAUCUGGCCUUCCUACAAGG |
2516-2543 |
170 |
17.86 |
0.00 |
91.50 |
36.45 |
44 |
HIV1ID0216
|
Site-directed mutagenesis |
PCR primer |
"V16BS 437 IR" |
34 |
|
GGGGGAAGGCCAGATCTTCCCTAAAAAATT(...) |
2079-2112 |
gag |
GGCUAAUUUUUUAGGGAAGAUCUGGCCUUC(...) |
2508-2541 |
170 |
17.65 |
0.00 |
92.57 |
36.74 |
44 |
HIV1ID0217
|
Site-directed mutagenesis |
PCR primer |
"V16BS 437 IF" |
34 |
|
GGCTAATTTTTTAGGGAAGATCTGGCCTTC(...) |
2079-2112 |
gag |
GGCUAAUUUUUUAGGGAAGAUCUGGCCUUC(...) |
2508-2541 |
170 |
17.65 |
0.00 |
92.57 |
36.74 |
44 |
HIV1ID0218
|
Site-directed mutagenesis |
PCR primer |
"V13BS 431AR" |
26 |
|
CCCTAAAAAATTAGCCTGTCTCTCAG |
2069-2094 |
gag |
CUGAGAGACAGGCUAAUUUUUUAGGG |
2499-2523 |
170 |
12.00 |
20.00 |
95.42 |
42.47 |
44 |
HIV1ID0219
|
Site-directed mutagenesis |
PCR primer |
"V13BS 431AF" |
26 |
|
CTGAGAGACAGGCTAATTTTTTAGGG |
2069-2094 |
gag |
CUGAGAGACAGGCUAAUUUUUUAGGG |
2499-2523 |
170 |
12.00 |
20.00 |
95.42 |
42.47 |
44 |
HIV1ID0220
|
PCR |
PCR primer forward |
"5'HIV-TR-16" |
26 |
|
CCTCTATTGTGTGCATCAAAGGATAG |
1041-1066 |
gag |
CCUCUAUUGUGUGCAUCAAAGGAUAG |
1339-1364 |
170 |
11.54 |
20.00 |
83.13 |
38.22 |
45 |
HIV1ID0221
|
PCR |
PCR primer reverse |
"5'HIV-TR-16" |
26 |
|
GGCTTCCTTGGTGTCTTTTACATCTA |
1089-1114 |
gag |
UUUAGACAAGAUAGAGGAAGAGCAAA |
1387-1412 |
170 |
3.85 |
0.00 |
79.32 |
27.72 |
45 |
HIV1ID0222
|
PCR |
PCR primer forward |
"5'HIV-TR-15" |
23 |
|
ACAACCATCCCTTCAGACAGGAT |
981-1003 |
gag |
ACAACCAUCCCUUCAGACAGGAU |
1279-1301 |
170 |
17.39 |
20.00 |
80.87 |
39.42 |
45 |
HIV1ID0223
|
PCR |
PCR primer reverse |
"5'HIV-TR-15" |
25 |
|
CCTTTGATGCACACAATCGAGGACT |
1038-1062 |
gag |
AACCCUCUAUUGUGUGCAUCAAAGG |
1336-1360 |
170 |
8.00 |
20.00 |
80.48 |
36.16 |
45 |
HIV1ID0224
|
PCR |
PCR primer forward |
"5'HIV-TR-14" |
22 |
|
ACTGGGACAGCTACAACCATCC |
969-990 |
gag |
ACUGGGACAGCUACAACCAUCC |
1267-1288 |
170 |
4.55 |
20.00 |
76.04 |
33.53 |
45 |
HIV1ID0225
|
PCR |
PCR primer reverse |
"5'HIV-TR-14" |
25 |
|
AAGTTCTTCTGATCCTGTCTGAAGG |
990-1014 |
gag |
CCUUCAGACAGGAUCAGAAGAACUU |
1288-1312 |
170 |
20.00 |
0.00 |
83.82 |
34.61 |
45 |
HIV1ID0226
|
PCR |
PCR primer forward |
"5'HIV-TR-13" |
26 |
|
GAGACATCAGAAGGCTGTAGACAAAT |
923-943 |
gag |
CAGUUAAUCCUGGCCUGUUAG |
1221-1241 |
170 |
9.52 |
0.00 |
86.81 |
32.11 |
45 |
HIV1ID0227
|
PCR |
PCR primer reverse |
"5'HIV-TR-13" |
21 |
|
GGATGGTTGTAGCTGTCCCAG |
970-990 |
gag |
CUGGGACAGCUACAACCAUCC |
1268-1288 |
170 |
4.76 |
0.00 |
75.01 |
26.59 |
45 |
HIV1ID0228
|
PCR |
PCR primer forward |
"5'HIV-TR-12" |
22 |
|
GATTCGCAGTTAATCCTGGCCT |
918-938 |
gag |
AUUCGCAGUUAAUCCUGGCCU |
1216-1236 |
170 |
9.52 |
0.00 |
86.99 |
32.17 |
45 |
HIV1ID0229
|
PCR |
PCR primer reverse |
"5'HIV-TR-12" |
28 |
|
CCAGTATTTGTCTACAGCCTTCTGATGT |
946-973 |
gag |
ACAUCAGAAGGCUGUAGACAAAUACUGG |
1244-1271 |
170 |
7.14 |
0.00 |
80.52 |
29.22 |
45 |
HIV1ID0230
|
PCR |
PCR primer forward |
"5'HIV-TR-11" |
21 |
|
GGGAGCTAGAACGATTCGCAG |
905-925 |
gag |
GGGAGCUAGAACGAUUCGCAG |
1203-1223 |
170 |
14.29 |
20.00 |
84.01 |
39.43 |
45 |
HIV1ID0231
|
PCR |
PCR primer reverse |
"5'HIV-TR-11" |
26 |
|
CTGATGTCTCTAAAAGGCCAGGATTA |
927-952 |
gag |
UAAUCCUGGCCUGUUAGAAACAUCAG |
1225-1250 |
170 |
7.69 |
0.00 |
86.63 |
31.44 |
45 |
HIV1ID0232
|
PCR |
PCR primer forward |
"5'HIV-TR-10" |
21 |
|
AAAATTCGGTTAAGGCCAGGG |
841-861 |
gag |
AAAAUUCGGUUAAGGCCAGGG |
1139-1159 |
168 |
14.29 |
20.00 |
89.34 |
41.21 |
45 |
HIV1ID0233
|
PCR |
PCR primer reverse |
"5'HIV-TR-10" |
25 |
|
GGATTAACTGCGAATCGTTCTAGCT |
908-932 |
gag |
AGCUAGAACGAUUCGCAGUUAAUCC |
1206-1230 |
170 |
12.00 |
0.00 |
83.89 |
31.96 |
45 |
HIV1ID0234
|
PCR |
PCR primer forward |
"5'HIV-TR-8" |
23 |
|
GCGGAGGCTAGAAGGAGAGAGAT |
769-791 |
LTR |
GCGGAGGCUAGAAGGAGAGAGAU |
1041-1051 |
102 |
36.36 |
60.00 |
98.12 |
64.83 |
45 |
HIV1ID0235
|
PCR |
PCR primer reverse |
"5'HIV-TR-8" |
21 |
|
TAATACCGACGCTCTCGCACC |
813-835 |
gag |
AAGCGGGGGAGAAUUAGAUCGAU |
1111-1133 |
168 |
13.04 |
20.00 |
84.57 |
39.21 |
45 |
HIV1ID0236
|
PCR |
PCR primer forward |
"5'HIV-TR-9" |
21 |
|
GCGAGAGCGTCGGTATTAAGC |
796-816 |
gag |
GCGAGAGCGUCAGUAUUAAGC |
1094-1114 |
168 |
9.52 |
0.00 |
92.42 |
33.98 |
45 |
HIV1ID0237
|
PCR |
PCR primer reverse |
"5'HIV-TR-9" |
19 |
|
TTTCCCCCTGGCCTTAACC |
848-866 |
gag |
GGUUAAGGCCAGGGGGAAA |
1146-1164 |
168 |
15.79 |
0.00 |
89.90 |
35.23 |
45 |
HIV1ID0238
|
PCR |
PCR primer forward |
"5'HIV-TR-7" |
21 |
|
CGACTGGTGAGTACGCCAAAA |
738-758 |
LTR |
CGACUGGUGAGUACGCCAAAA |
989-1007 |
99 |
36.84 |
0.00 |
94.34 |
43.73 |
45 |
HIV1ID0239
|
PCR |
PCR primer reverse |
"5'HIV-TR-7" |
23 |
|
ATCTCTCTCCTTCTAGCCTCCGC |
769-791 |
LTR |
GCGGAGGCUAGAAGGAGAGAGAU |
1041-1051 |
102 |
36.36 |
40.00 |
98.12 |
58.16 |
45 |
HIV1ID0240
|
PCR |
PCR primer forward |
"5'HIV-TR-6" |
20 |
|
CAGGACTCGGCTTGCTGAAG |
692-711 |
LTR |
CAGGACUCGGCUUGCUGAAG |
1433-1440 |
168 |
0.00 |
0.00 |
79.41 |
26.47 |
45 |
HIV1ID0241
|
PCR |
PCR primer reverse |
"5'HIV-TR-6" |
15 |
|
CACCAGTCGCCGCCC |
732-746 |
LTR |
GGGCGGCGACUGGUG |
989-995 |
99 |
14.29 |
20.00 |
98.65 |
44.31 |
45 |
HIV1ID0242
|
PCR |
PCR primer forward |
"5'HIV-TR-5" |
16 |
|
GTGGCGCCCGAACAGG |
635-650 |
LTR |
GUGGCGCCCGAACAGG |
790-805 |
80 |
6.25 |
20.00 |
96.86 |
41.04 |
45 |
HIV1ID0243
|
PCR |
PCR primer reverse |
"5'HIV-TR-5" |
15 |
|
TTGCCGTGCGCGCTT |
709-723 |
LTR |
AAGCGCGCACGGCAA |
941-955 |
98 |
6.67 |
0.00 |
83.91 |
30.19 |
45 |
HIV1ID0244
|
PCR |
PCR primer forward |
"5'HIV-TR-4" |
25 |
|
GAGATCCCTCAGACCCTTTTAGTCA |
591-615 |
5'LTR |
GAGAUCCCUCAGACCCUUUUAGUCA |
738-765 |
64 |
0.00 |
0.00 |
84.05 |
28.02 |
45 |
HIV1ID0245
|
PCR |
PCR primer reverse |
"5'HIV-TR-4" |
19 |
|
TTCAAGTCCCTGTTCGGGC |
640-658 |
LTR |
GCCCGAACAGGGACCUGAA |
795-813 |
82 |
0.00 |
0.00 |
95.46 |
31.82 |
45 |
HIV1ID0246
|
PCR |
PCR primer forward |
"5'HIV-TR-3" |
21 |
|
AGTGTGTGCCCGTCTGTTGTG |
555-575 |
5'LTR |
AGUGUGUGCCCGUCUGUUGUG |
686-707 |
61 |
0.00 |
0.00 |
93.49 |
31.16 |
45 |
HIV1ID0247
|
PCR |
PCR primer reverse |
"5'HIV-TR-3" |
27 |
|
TGACTAAAAGGGTCTGAGGGATCTCTA |
589-615 |
5'LTR |
UAGAGAUCCCUCAGACCCUUUUAGUCA |
736-765 |
64 |
0.00 |
40.00 |
85.10 |
41.70 |
45 |
HIV1ID0248
|
PCR |
PCR primer forward |
"5'HIV-TR-2" |
23 |
|
AAGCCTCAATAAAGCTTGCCTTG |
520-542 |
5'LTR |
AAGCCUCAAUAAAGCUUGCCUUG |
648-668 |
48 |
0.00 |
0.00 |
94.67 |
31.56 |
45 |
HIV1ID0249
|
PCR |
PCR primer reverse |
"5'HIV-TR-2" |
21 |
|
AGTCACACAACAGACGGGCAC |
560-580 |
5'LTR |
GUGCCCGUCUGUUGUGUGACU |
691-709 |
61 |
0.00 |
60.00 |
93.12 |
51.04 |
45 |
HIV1ID0250
|
PCR |
PCR primer forward |
"5'HIV-TR-1" |
23 |
|
TCTCTGGCTAACTAGGGAACCCA |
491-513 |
5'LTR |
UCUCUGGCUAACUAGGGAACCCA |
608-634 |
40 |
37.04 |
100.00 |
88.28 |
75.11 |
45 |
HIV1ID0251
|
PCR |
PCR primer reverse |
"5'HIV-TR-1" |
23 |
|
GCACTCAAGGCAAGCTTTATTGA |
525-547 |
5'LTR |
UCAAUAAAGCUUGCCUUGAGUGC |
648-671 |
49 |
0.00 |
20.00 |
93.61 |
37.87 |
45 |
HIV1ID0252
|
PCR |
PCR primer forward |
"LEX074" |
17 |
|
AAGAGTGCTCCCGTGTG |
7733-7749 |
env |
AAGAGUGGUGCAGAGAG |
8773-8843 |
170 |
2.82 |
0.00 |
85.35 |
29.39 |
46 |
HIV1ID0253
|
PCR |
PCR primer reverse |
"LEX074" |
20 |
|
GACAATGCAGAACTGGGTAA |
7059-7078 |
env |
GACAAUGCUAAAACCAUAAU |
7956-7975 |
170 |
5.00 |
20.00 |
82.52 |
35.84 |
46 |
HIV1ID0254
|
Gene silencing |
siRNA sense |
"siControl" |
21 |
|
GUACCGCACGUCAUUCGUAUC |
7838-7858 |
env |
GGUACAGGCCAGACAAUUAUU |
8902-8922 |
170 |
23.81 |
0.00 |
92.76 |
38.86 |
47 |
HIV1ID0255
|
Gene silencing |
siRNA antisense |
"siControl" |
21 |
|
UACGAAUGACGUGCGGUACGU |
5538-5558 |
sor |
UACGAAACUGACAGAGGAUAG |
6153-6173 |
170 |
14.29 |
20.00 |
78.18 |
37.49 |
47 |
HIV1ID0256
|
Gene silencing |
siRNA sense |
"si7658" |
21 |
|
GGAGAAGUGAAUUAUAUAAAU |
7660-7680 |
env |
GGAGAAGUGAAUUAUAUAAAU |
8700-8720 |
170 |
33.33 |
20.00 |
94.12 |
49.15 |
47 |
HIV1ID0257
|
Gene silencing |
siRNA antisense |
"si7658" |
21 |
|
UUAUAUAAUUCACUUCUCCAA |
7658-7678 |
env |
UUGGAGAAGUGAAUUAUAUAA |
8698-8718 |
170 |
33.33 |
40.00 |
95.83 |
56.39 |
47 |
HIV1ID0258
|
Gene silencing |
siRNA sense |
"si7653" |
21 |
|
CAAUUGGAGAAGUGAAUUAUA |
7655-7675 |
env |
CAAUUGGAGAAGUGAAUUAUA |
8695-8715 |
170 |
28.57 |
20.00 |
95.83 |
48.13 |
47 |
HIV1ID0259
|
Gene silencing |
siRNA antisense |
"si7653" |
21 |
|
UAAUUCACUUCUCCAAUUGUC |
7653-7673 |
env |
GACAAUUGGAGAAGUGAAUUA |
8693-8713 |
170 |
28.57 |
20.00 |
95.67 |
48.08 |
47 |
HIV1ID0260
|
Gene silencing |
siRNA sense |
"si4961" |
21 |
|
GUGAAGGGGCAGUAGUAAUAC |
4963-4983 |
pol |
GUGAAGGGGCAGUAGUAAUAC |
5554-5574 |
170 |
47.62 |
20.00 |
96.74 |
54.79 |
47 |
HIV1ID0261
|
Gene silencing |
siRNA antisense |
"si4961" |
21 |
|
AUUACUACUGCCCCUUCACCU |
4961-4981 |
pol |
AGGUGAAGGGGCAGUAGUAAU |
5552-5572 |
170 |
52.38 |
20.00 |
96.85 |
56.41 |
47 |
HIV1ID0262
|
Gene silencing |
siRNA sense |
"si4960" |
21 |
|
GGUGAAGGGGCAGUAGUAAUA |
4962-4982 |
pol |
GGUGAAGGGGCAGUAGUAAUA |
5553-5573 |
170 |
47.62 |
0.00 |
96.74 |
48.12 |
47 |
HIV1ID0263
|
Gene silencing |
siRNA antisense |
"si4960" |
21 |
|
UUACUACUGCCCCUUCACCUU |
4960-4980 |
pol |
AAGGUGAAGGGGCAGUAGUAA |
5551-5571 |
170 |
52.38 |
20.00 |
96.85 |
56.41 |
47 |
HIV1ID0264
|
Gene silencing |
siRNA sense |
"si4888" |
21 |
|
CAAAAUUUUCGGGUUUAUUAC |
4890-4910 |
pol |
CAAAAUUUUCGGGUUUAUUAC |
5481-5501 |
170 |
33.33 |
20.00 |
96.70 |
50.01 |
47 |
HIV1ID0265
|
Gene silencing |
siRNA antisense |
"si4888" |
21 |
|
AAUAAACCCGAAAAUUUUGAA |
4888-4908 |
pol |
UUCAAAAUUUUCGGGUUUAUU |
5479-5499 |
170 |
28.57 |
0.00 |
97.00 |
41.86 |
47 |
HIV1ID0266
|
Gene silencing |
siRNA sense |
"si4840" |
21 |
|
GCAACAGACAUACAAACUAAA |
4842-4862 |
pol |
GCAACAGACAUACAAACUAAA |
5433-5453 |
170 |
28.57 |
20.00 |
92.37 |
46.98 |
47 |
HIV1ID0267
|
Gene silencing |
siRNA antisense |
"si4840" |
21 |
|
UAGUUUGUAUGUCUGUUGCUA |
4840-4860 |
pol |
UAGCAACAGACAUACAAACUA |
5431-5451 |
170 |
33.33 |
40.00 |
93.88 |
55.74 |
47 |
HIV1ID0268
|
Gene silencing |
siRNA sense |
"si4809" |
21 |
|
CAGUGCAGGGGAAAGAAUAGU |
4811-4831 |
pol |
CAGUGCAGGGGAAAGAAUAGU |
5402-5422 |
170 |
42.86 |
40.00 |
96.36 |
59.74 |
47 |
HIV1ID0269
|
Gene silencing |
siRNA antisense |
"si4809" |
21 |
|
UAUUCUUUCCCCUGCACUGUA |
4809-4829 |
pol |
UACAGUGCAGGGGAAAGAAUA |
5400-5420 |
170 |
47.62 |
60.00 |
97.96 |
68.53 |
47 |
HIV1ID0270
|
Gene silencing |
siRNA sense |
"si4806" |
21 |
|
GUACAGUGCAGGGGAAAGAAU |
4808-4828 |
pol |
GUACAGUGCAGGGGAAAGAAU |
5399-5419 |
170 |
42.86 |
60.00 |
96.43 |
66.43 |
47 |
HIV1ID0271
|
Gene silencing |
siRNA antisense |
"si4806" |
21 |
|
UCUUUCCCCUGCACUGUACCC |
4806-4826 |
pol |
GGGUACAGUGCAGGGGAAAGA |
5397-5417 |
170 |
38.10 |
60.00 |
95.95 |
64.68 |
47 |
HIV1ID0272
|
Gene silencing |
siRNA sense |
"si4794" |
21 |
|
GGGGAUUGGGGGGUACAGUGC |
4796-4816 |
pol |
GGGGAUUGGGGGGUACAGUGC |
5388-5407 |
170 |
40.00 |
40.00 |
96.97 |
58.99 |
47 |
HIV1ID0273
|
Gene silencing |
siRNA antisense |
"si4794" |
21 |
|
ACUGUACCCCCCAAUCCCCCC |
4794-4814 |
pol |
GGGGGGAUUGGGGGGUACAGU |
5388-5405 |
170 |
38.89 |
40.00 |
96.69 |
58.52 |
47 |
HIV1ID0274
|
Gene silencing |
siRNA sense |
"si4753" |
21 |
|
GUACAAAUGGCAGUAUUCAUC |
4755-4775 |
pol |
GUACAAAUGGCAGUAUUCAUC |
5345-5365 |
170 |
23.81 |
0.00 |
94.35 |
39.39 |
47 |
HIV1ID0275
|
Gene silencing |
siRNA antisense |
"si4753" |
21 |
|
UGAAUACUGCCAUUUGUACUG |
4753-4773 |
pol |
CAGUACAAAUGGCAGUAUUCA |
5343-5363 |
170 |
28.57 |
0.00 |
96.61 |
41.73 |
47 |
HIV1ID0276
|
Gene silencing |
siRNA sense |
"si4751" |
21 |
|
CAGUACAAAUGGCAGUAUUCA |
4753-4773 |
pol |
CAGUACAAAUGGCAGUAUUCA |
5343-5363 |
170 |
28.57 |
0.00 |
96.61 |
41.73 |
47 |
HIV1ID0277
|
Gene silencing |
siRNA antisense |
"si4751" |
21 |
|
AAUACUGCCAUUUGUACUGCU |
4751-4771 |
pol |
AGCAGUACAAAUGGCAGUAUU |
5341-5361 |
170 |
33.33 |
20.00 |
97.04 |
50.12 |
47 |
HIV1ID0278
|
Gene silencing |
siRNA sense |
"si4750" |
21 |
|
GCAGUACAAAUGGCAGUAUUC |
4752-4772 |
pol |
GCAGUACAAAUGGCAGUAUUC |
5342-5362 |
170 |
33.33 |
0.00 |
96.72 |
43.35 |
47 |
HIV1ID0279
|
Gene silencing |
siRNA antisense |
"si4750" |
21 |
|
AUACUGCCAUUUGUACUGCUG |
4750-4770 |
pol |
CAGCAGUACAAAUGGCAGUAU |
5340-5360 |
170 |
38.10 |
20.00 |
97.09 |
51.73 |
47 |
HIV1ID0280
|
Gene silencing |
siRNA sense |
"si4746" |
21 |
|
GACAGCAGUACAAAUGGCAGU |
4748-4768 |
pol |
GACAGCAGUACAAAUGGCAGU |
5338-5358 |
170 |
42.86 |
40.00 |
96.86 |
59.91 |
47 |
HIV1ID0281
|
Gene silencing |
siRNA antisense |
"si4746" |
21 |
|
UGCCAUUUGUACUGCUGUCUU |
4746-4766 |
pol |
AAGACAGCAGUACAAAUGGCA |
5336-5356 |
170 |
38.10 |
40.00 |
96.53 |
58.21 |
47 |
HIV1ID0282
|
Gene silencing |
siRNA sense |
"si4652" |
21 |
|
CCUACAAUCCCCAAAGUCAAG |
4654-4674 |
pol |
CCUACAAUCCCCAAAGUCAAG |
5244-5264 |
170 |
61.90 |
60.00 |
95.51 |
72.47 |
47 |
HIV1ID0283
|
Gene silencing |
siRNA antisense |
"si4652" |
21 |
|
UGACUUUGGGGAUUGUAGGGA |
4652-4672 |
pol |
UCCCUACAAUCCCCAAAGUCA |
5242-5262 |
170 |
57.14 |
80.00 |
96.01 |
77.72 |
47 |
HIV1ID0284
|
Gene silencing |
siRNA sense |
"si4378" |
21 |
|
CAUGGACAAGUAGACUGUAGU |
4380-4400 |
pol |
CAUGGACAAGUAGACUGUAGU |
4969-4989 |
170 |
47.62 |
40.00 |
95.75 |
61.12 |
47 |
HIV1ID0285
|
Gene silencing |
siRNA antisense |
"si4378" |
21 |
|
UACAGUCUACUUGUCCAUGCA |
4378-4398 |
pol |
UGCAUGGACAAGUAGACUGUA |
4967-4987 |
170 |
42.86 |
20.00 |
94.73 |
52.53 |
47 |
HIV1ID0286
|
Gene silencing |
siRNA sense |
"si4373" |
21 |
|
CCAUGCAUGGACAAGUAGACU |
4375-4395 |
pol |
CCAUGCAUGGACAAGUAGACU |
4964-4984 |
170 |
42.86 |
40.00 |
94.30 |
59.05 |
47 |
HIV1ID0287
|
Gene silencing |
siRNA antisense |
"si4373" |
21 |
|
UCUACUUGUCCAUGCAUGGCU |
4373-4393 |
pol |
AGCCAUGCAUGGACAAGUAGA |
4962-4982 |
170 |
42.86 |
40.00 |
94.50 |
59.12 |
47 |
HIV1ID0288
|
Gene silencing |
siRNA sense |
"si4175" |
21 |
|
GAGGAAAUGAACAAGUAGAUA |
4177-4197 |
pol |
GAGGAAAUGAACAAGUAGAUA |
4761-4781 |
170 |
42.86 |
60.00 |
96.27 |
66.37 |
47 |
HIV1ID0289
|
Gene silencing |
siRNA antisense |
"si4175" |
21 |
|
UCUACUUGUUCAUUUCCUCCA |
4175-4195 |
pol |
UGGAGGAAAUGAACAAGUAGA |
4759-4779 |
170 |
42.86 |
40.00 |
96.69 |
59.85 |
47 |
HIV1ID0290
|
Gene silencing |
siRNA sense |
"si3011" |
21 |
|
GAUCACCAGCAAUAUUCCAAA |
3013-3033 |
pol |
GAUCACCAGCAAUAUUCCAAA |
3592-3612 |
170 |
33.33 |
40.00 |
89.75 |
54.36 |
47 |
HIV1ID0291
|
Gene silencing |
siRNA antisense |
"si3011" |
21 |
|
UGGAAUAUUGCUGGUGAUCCU |
3011-3031 |
pol |
AGGAUCACCAGCAAUAUUCCA |
3590-3610 |
170 |
38.10 |
40.00 |
94.27 |
57.45 |
47 |
HIV1ID0292
|
Gene silencing |
siRNA sense |
"si3006" |
21 |
|
GAAAGGAUCACCAGCAAUAUU |
3008-3028 |
pol |
GAAAGGAUCACCAGCAAUAUU |
3587-3607 |
170 |
42.86 |
20.00 |
96.06 |
52.97 |
47 |
HIV1ID0293
|
Gene silencing |
siRNA antisense |
"si3006" |
21 |
|
UAUUGCUGGUGAUCCUUUCCA |
3006-3026 |
pol |
UGGAAAGGAUCACCAGCAAUA |
3585-3605 |
170 |
47.62 |
40.00 |
96.12 |
61.25 |
47 |
HIV1ID0294
|
Gene silencing |
siRNA sense |
"si3005" |
21 |
|
GGAAAGGAUCACCAGCAAUAU |
3007-3027 |
pol |
GGAAAGGAUCACCAGCAAUAU |
3586-3606 |
170 |
47.62 |
20.00 |
96.12 |
54.58 |
47 |
HIV1ID0295
|
Gene silencing |
siRNA antisense |
"si3005" |
21 |
|
AUUGCUGGUGAUCCUUUCCAU |
3005-3025 |
pol |
AUGGAAAGGAUCACCAGCAAU |
3584-3604 |
170 |
47.62 |
40.00 |
95.59 |
61.07 |
47 |
HIV1ID0296
|
Gene silencing |
siRNA sense |
"si3000" |
21 |
|
GGGAUGGAAAGGAUCACCAGC |
3002-3022 |
pol |
GGGAUGGAAAGGAUCACCAGC |
3581-3601 |
170 |
52.38 |
40.00 |
94.70 |
62.36 |
47 |
HIV1ID0297
|
Gene silencing |
siRNA antisense |
"si3000" |
21 |
|
UGGUGAUCCUUUCCAUCCCUG |
3000-3020 |
pol |
CAGGGAUGGAAAGGAUCACCA |
3579-3599 |
170 |
47.62 |
40.00 |
95.17 |
60.93 |
47 |
HIV1ID0298
|
Gene silencing |
siRNA sense |
"si2486" |
21 |
|
CUACACCUGUCAACAUAAUUG |
2488-2508 |
pol |
CUACACCUGUCAACAUAAUUG |
3064-3077 |
170 |
50.00 |
40.00 |
93.45 |
61.15 |
47 |
HIV1ID0299
|
Gene silencing |
siRNA antisense |
"si2486" |
21 |
|
AUUAUGUUGACAGGUGUAGGU |
2486-2506 |
pol |
ACCUACACCUGUCAACAUAAU |
3062-3077 |
170 |
50.00 |
40.00 |
93.64 |
61.21 |
47 |
HIV1ID0300
|
Gene silencing |
siRNA sense |
"si2485" |
21 |
|
CCUACACCUGUCAACAUAAUU |
2487-2507 |
pol |
CCUACACCUGUCAACAUAAUU |
3063-3077 |
170 |
53.33 |
40.00 |
93.89 |
62.41 |
47 |
HIV1ID0301
|
Gene silencing |
siRNA antisense |
"si2485" |
21 |
|
UUAUGUUGACAGGUGUAGGUC |
2485-2505 |
pol |
GACCUACACCUGUCAACAUAA |
3061-3077 |
170 |
52.94 |
40.00 |
94.02 |
62.32 |
47 |
HIV1ID0302
|
Gene silencing |
siRNA sense |
"si2333" |
21 |
|
CAGAUGAUACAGUAUUAGAAG |
2335-2355 |
gag |
CAGAUGAUACAGUAUUAGAAG |
2908-2928 |
170 |
38.10 |
20.00 |
97.69 |
51.93 |
47 |
HIV1ID0303
|
Gene silencing |
siRNA antisense |
"si2333" |
21 |
|
UCUAAUACUGUAUCAUCUGCU |
2333-2353 |
gag |
AGCAGAUGAUACAGUAUUAGA |
2906-2926 |
170 |
42.86 |
20.00 |
97.60 |
53.49 |
47 |
HIV1ID0304
|
Gene silencing |
siRNA sense |
"si2330" |
21 |
|
GAGCAGAUGAUACAGUAUUAG |
2332-2352 |
gag |
GAGCAGAUGAUACAGUAUUAG |
2905-2925 |
170 |
42.86 |
0.00 |
97.60 |
46.82 |
47 |
HIV1ID0305
|
Gene silencing |
siRNA antisense |
"si2330" |
21 |
|
AAUACUGUAUCAUCUGCUCCU |
2330-2350 |
gag |
AGGAGCAGAUGAUACAGUAUU |
2903-2923 |
170 |
47.62 |
20.00 |
97.66 |
55.09 |
47 |
HIV1ID0306
|
Gene silencing |
siRNA sense |
"si2329" |
21 |
|
GGAGCAGAUGAUACAGUAUUA |
2331-2351 |
gag |
GGAGCAGAUGAUACAGUAUUA |
2904-2924 |
170 |
47.62 |
0.00 |
97.66 |
48.43 |
47 |
HIV1ID0307
|
Gene silencing |
siRNA antisense |
"si2329" |
21 |
|
AUACUGUAUCAUCUGCUCCUG |
2329-2349 |
gag |
CAGGAGCAGAUGAUACAGUAU |
2902-2922 |
170 |
52.38 |
40.00 |
97.71 |
63.36 |
47 |
HIV1ID0308
|
Gene silencing |
siRNA sense |
"si2075" |
21 |
|
CAGGCUAAUUUUUUAGGGAAG |
2077-2097 |
gag |
CAGGCUAAUUUUUUAGGGAAG |
2506-2526 |
170 |
19.05 |
20.00 |
96.56 |
45.20 |
47 |
HIV1ID0309
|
Gene silencing |
siRNA antisense |
"si2075" |
21 |
|
UCCCUAAAAAAUUAGCCUGUC |
2075-2095 |
gag |
GACAGGCUAAUUUUUUAGGGA |
2504-2524 |
170 |
19.05 |
40.00 |
97.53 |
52.19 |
47 |
HIV1ID0310
|
Gene silencing |
siRNA sense |
"si1817" |
21 |
|
GAAGAAAUGAUGACAGCAUGU |
1819-1839 |
gag |
GAAGAAAUGAUGACAGCAUGU |
2206-2226 |
170 |
42.86 |
20.00 |
96.77 |
53.21 |
47 |
HIV1ID0311
|
Gene silencing |
siRNA antisense |
"si1817" |
21 |
|
AUGCUGUCAUCAUUUCUUCUA |
1817-1837 |
gag |
UAGAAGAAAUGAUGACAGCAU |
2204-2224 |
170 |
38.10 |
0.00 |
98.07 |
45.39 |
47 |
HIV1ID0312
|
Gene silencing |
siRNA sense |
"si1490" |
21 |
|
GACAUAGCAGGAACUACUAGU |
1492-1512 |
gag |
GACAUAGCAGGAACUACUAGU |
1867-1887 |
170 |
38.10 |
40.00 |
93.73 |
57.28 |
47 |
HIV1ID0313
|
Gene silencing |
siRNA antisense |
"si1490" |
21 |
|
UAGUAGUUCCUGCUAUGUCAC |
1490-1510 |
gag |
GUGACAUAGCAGGAACUACUA |
1865-1885 |
170 |
38.10 |
40.00 |
93.73 |
57.28 |
47 |
HIV1ID0314
|
Gene silencing |
siRNA sense |
"si770" |
21 |
|
GAGGCUAGAAGGAGAGAGAUG |
772-792 |
gag |
GAGGCUAGAAGGAGAGAGAUG |
1080-1090 |
117 |
0.00 |
0.00 |
97.43 |
32.48 |
47 |
HIV1ID0315
|
Gene silencing |
siRNA antisense |
"si770" |
21 |
|
UCUCUCUCCUUCUAGCCUCCG |
770-790 |
gag |
CGGAGGCUAGAAGGAGAGAGA |
1041-1051 |
102 |
36.36 |
60.00 |
98.12 |
64.83 |
47 |
HIV1ID0316
|
Gene silencing |
siRNA sense |
"si764" |
21 |
|
CUAGCGGAGGCUAGAAGGAGA |
766-786 |
gag |
CUAGCGGAGGCUAGAAGGAGA |
1041-1051 |
102 |
36.36 |
60.00 |
98.12 |
64.83 |
47 |
HIV1ID0317
|
Gene silencing |
siRNA antisense |
"si764" |
21 |
|
UCCUUCUAGCCUCCGCUAGUC |
764-784 |
gag |
GACUAGCGGAGGCUAGAAGGA |
1041-1051 |
102 |
36.36 |
60.00 |
98.12 |
64.83 |
47 |
HIV1ID0318
|
Gene silencing |
siRNA sense |
"si690" |
21 |
|
CAGGACUCGGCUUGCUGAAGC |
692-712 |
LTR |
CAGGACUCGGCUUGCUGAAGC |
1433-1440 |
168 |
0.00 |
0.00 |
79.41 |
26.47 |
47 |
HIV1ID0319
|
Gene silencing |
siRNA antisense |
"si690" |
21 |
|
UUCAGCAAGCCGAGUCCUGCG |
690-710 |
LTR |
CGCAGGACUCGGCUUGCUGAA |
1433-1440 |
168 |
0.00 |
0.00 |
79.41 |
26.47 |
47 |
HIV1ID0320
|
Gene silencing |
siRNA sense |
"si689" |
21 |
|
GCAGGACUCGGCUUGCUGAAG |
691-711 |
LTR |
GCAGGACUCGGCUUGCUGAAG |
1433-1440 |
168 |
0.00 |
0.00 |
79.41 |
26.47 |
47 |
HIV1ID0321
|
Gene silencing |
siRNA antisense |
"si689" |
21 |
|
UCAGCAAGCCGAGUCCUGCGU |
689-709 |
LTR |
ACGCAGGACUCGGCUUGCUGA |
1433-1440 |
168 |
0.00 |
0.00 |
79.41 |
26.47 |
47 |
HIV1ID0322
|
Gene silencing |
siRNA sense |
"si575" |
21 |
|
GACUCUGGUAACUAGAGAUCC |
577-597 |
5'LTR |
GACUCUGGUAACUAGAGAUCC |
725-744 |
61 |
50.00 |
80.00 |
97.20 |
75.73 |
47 |
HIV1ID0323
|
Gene silencing |
siRNA antisense |
"si575" |
21 |
|
AUCUCUAGUUACCAGAGUCAC |
575-595 |
5'LTR |
GUGACUCUGGUAACUAGAGAU |
725-742 |
61 |
44.44 |
40.00 |
96.88 |
60.44 |
47 |
HIV1ID0324
|
Gene silencing |
siRNA sense |
"si554" |
21 |
|
GUGUGUGCCCGUCUGUUGUGU |
576-596 |
5'LTR |
UGACUCUGGUAACUAGAGAUC |
725-743 |
61 |
47.37 |
60.00 |
97.05 |
68.14 |
47 |
HIV1ID0325
|
Gene silencing |
siRNA antisense |
"si554" |
21 |
|
ACAACAGACGGGCACACACUA |
554-574 |
5'LTR |
UAGUGUGUGCCCGUCUGUUGU |
685-706 |
61 |
0.00 |
0.00 |
93.97 |
31.32 |
47 |
HIV1ID0326
|
Gene silencing |
siRNA sense |
"si521" |
21 |
|
CCUCAAUAAAGCUUGCCUUGA |
523-543 |
5'LTR |
CCUCAAUAAAGCUUGCCUUGA |
648-669 |
49 |
0.00 |
0.00 |
94.27 |
31.42 |
47 |
HIV1ID0327
|
Gene silencing |
siRNA antisense |
"si521" |
21 |
|
AAGGCAAGCUUUAUUGAGGCU |
521-541 |
5'LTR |
AGCCUCAAUAAAGCUUGCCUU |
648-667 |
48 |
0.00 |
0.00 |
94.86 |
31.62 |
47 |
HIV1ID0328
|
Gene silencing |
siRNA sense |
"si515" |
21 |
|
CUUAAGCCUCAAUAAAGCUUG |
517-537 |
5'LTR |
CUUAAGCCUCAAUAAAGCUUG |
638-656 |
45 |
15.79 |
40.00 |
94.40 |
50.06 |
47 |
HIV1ID0329
|
Gene silencing |
siRNA antisense |
"si515" |
21 |
|
AGCUUUAUUGAGGCUUAAGCA |
515-535 |
5'LTR |
UGCUUAAGCCUCAAUAAAGCU |
636-656 |
45 |
14.29 |
40.00 |
94.72 |
49.67 |
47 |
HIV1ID0330
|
Gene silencing |
siRNA sense |
"si512" |
21 |
|
CUGCUUAAGCCUCAAUAAAGC |
514-534 |
5'LTR |
CUGCUUAAGCCUCAAUAAAGC |
635-656 |
45 |
13.64 |
40.00 |
94.94 |
49.53 |
47 |
HIV1ID0331
|
Gene silencing |
siRNA antisense |
"si512" |
21 |
|
UUUAUUGAGGCUUAAGCAGUG |
512-532 |
5'LTR |
CACUGCUUAAGCCUCAAUAAA |
633-655 |
45 |
13.04 |
40.00 |
95.32 |
49.46 |
47 |
HIV1ID0332
|
Gene silencing |
siRNA sense |
"si510" |
21 |
|
CACUGCUUAAGCCUCAAUAAA |
512-532 |
5'LTR |
CACUGCUUAAGCCUCAAUAAA |
633-655 |
45 |
13.04 |
40.00 |
95.32 |
49.46 |
47 |
HIV1ID0333
|
Gene silencing |
siRNA antisense |
"si510" |
21 |
|
UAUUGAGGCUUAAGCAGUGGG |
510-530 |
5'LTR |
CCCACUGCUUAAGCCUCAAUA |
631-653 |
45 |
8.70 |
40.00 |
95.46 |
48.05 |
47 |
HIV1ID0334
|
Gene silencing |
siRNA sense |
"si509" |
21 |
|
CCACUGCUUAAGCCUCAAUAA |
511-531 |
5'LTR |
CCACUGCUUAAGCCUCAAUAA |
632-654 |
45 |
13.04 |
40.00 |
95.51 |
49.52 |
47 |
HIV1ID0335
|
Gene silencing |
siRNA antisense |
"si509" |
21 |
|
AUUGAGGCUUAAGCAGUGGGU |
509-529 |
5'LTR |
ACCCACUGCUUAAGCCUCAAU |
630-645 |
43 |
0.00 |
0.00 |
95.66 |
31.89 |
47 |
HIV1ID0336
|
Gene silencing |
siRNA sense sequence |
"TAR" |
21 |
|
AGACCAGATCTGAGCCTGGTT |
468-488 |
5'LTR |
AGACCAGAUCUGAGCCUGGGA |
586-605 |
39 |
10.00 |
40.00 |
92.29 |
47.43 |
48 |
HIV1ID0337
|
Gene silencing |
siRNA sense sequence |
"Tat(SF2)" |
21 |
|
CTGCTTGTAACAATTGCTATT |
5889-5909 |
tat |
CUGCUUGUACCAAUUGCUAUU |
6524-6544 |
170 |
14.29 |
0.00 |
80.25 |
31.51 |
48 |
HIV1ID0338
|
Gene silencing |
shRNA sequence |
"vif" |
49 |
|
GTTCAGAAGTACACATCCCTTCAAGAGAGG(...) |
5193-5213 |
sor |
AAGUUCAGAAGUACACAUCCC |
5784-5804 |
170 |
28.57 |
60.00 |
95.40 |
61.32 |
49 |
HIV1ID0339
|
Gene silencing |
shRNA sequence |
"gag" |
49 |
|
GATTGTACTGAGAGACAGGTTCAAGAGACC(...) |
2060-2080 |
gag |
AAGAUUGUACUGAGAGACAGG |
2499-2509 |
170 |
9.09 |
20.00 |
91.68 |
40.26 |
49 |
HIV1ID0340
|
Gene silencing |
shRNA sequence |
"rev" |
49 |
|
GGCACTTATCTGGGACGATTTCAAGAGAAT(...) |
8483-8501 |
env |
GGCACUUAUCUGGGACGAU |
9603-9621 |
170 |
21.05 |
40.00 |
79.77 |
46.94 |
49 |
HIV1ID0341
|
Gene silencing |
shRNA sequence |
"Nef" |
49 |
|
GTGCCTGGCTAGAAGCACATTCAAGAGATG(...) |
8960-8978 |
27k protein |
GUGCCUGGCUAGAAGCACA |
10198-10216 |
164 |
5.26 |
20.00 |
85.72 |
36.99 |
50 |
HIV1ID0342
|
Gene silencing |
shRNA sequence |
"UTR-B" |
49 |
|
GGCTAGAAGGAGAGAGATGTTCAAGAGACA(...) |
774-792 |
LTR |
GGCUAGAAGGAGAGAGAUG |
1080-1090 |
117 |
0.00 |
0.00 |
97.43 |
32.48 |
50 |
HIV1ID0343
|
Gene silencing |
shRNA sequence |
"UTR-A" |
49 |
|
GCGGAGGCTAGAAGGAGAGTTCAAGAGACT(...) |
769-787 |
LTR |
GCGGAGGCUAGAAGGAGAG |
1041-1051 |
102 |
36.36 |
60.00 |
98.12 |
64.83 |
50 |
HIV1ID0344
|
Gene silencing |
shRNA sequence |
"TatRev-B" |
49 |
|
CCTATGGCAGGAAGAAGCGTTCAAGAGACG(...) |
5967-6016 |
tat |
CCUAUGGCAGGAAGAAGCGGAGACAGCGAC(...) |
6617-6674 |
170 |
18.97 |
0.00 |
84.26 |
34.41 |
50 |
HIV1ID0345
|
Gene silencing |
shRNA sequence |
"TatRev-A" |
49 |
|
GCCTTAGGCATCTCCTATGTTCAAGAGACA(...) |
5954-5972 |
tat |
GCCUUAGGCAUCUCCUAUG |
6604-6622 |
170 |
26.32 |
40.00 |
94.49 |
53.60 |
50 |
HIV1ID0346
|
Gene silencing |
shRNA sequence |
"PPT" |
49 |
|
GGGGGGACTGGAAGGGCTATTCAAGAGATA(...) |
9078-9096 |
27k protein |
GGGGGGACUGGAAGGGCUA |
10325-10343 |
163 |
21.05 |
0.00 |
93.05 |
38.03 |
50 |
HIV1ID0347
|
Gene silencing |
shRNA sequence |
"PBS-B" |
51 |
|
TGGCGCCCGAACAGGGACTTTTCAAGAGAA(...) |
636-653 |
LTR |
UGGCGCCCGAACAGGGAC |
791-808 |
80 |
5.56 |
20.00 |
97.15 |
40.90 |
50 |
HIV1ID0348
|
Gene silencing |
shRNA sequence |
"shRNA-1" |
53 |
|
GTGGCGCCCGAACAGGGACTTTTCAAGAGA(...) |
635-653 |
LTR |
GUGGCGCCCGAACAGGGAC |
790-808 |
80 |
5.26 |
20.00 |
96.88 |
40.71 |
50 |
HIV1ID0349
|
Gene silencing |
siRNA sense sequence |
"M441" |
21 |
|
CTTGGCACTAACAGCATTATT |
5481-5501 |
sor |
CUUGGCACUAGCAGCAUUAAU |
6081-6101 |
170 |
9.52 |
0.00 |
81.23 |
30.25 |
51 |
HIV1ID0350
|
Gene silencing |
siRNA antisense sequence |
"M441" |
21 |
|
TAATGCTGTTAGTGCCAAGTT |
5481-5501 |
sor |
CUUGGCACUAGCAGCAUUAAU |
6081-6101 |
170 |
9.52 |
0.00 |
81.23 |
30.25 |
51 |
HIV1ID0351
|
Gene silencing |
siRNA sense sequence |
"M98" |
20 |
|
GAAAGCTAGGGGATGGTTTT |
5139-5158 |
sor |
GAAAGCUAGGGGAUGGUUUU |
5730-5749 |
170 |
5.00 |
0.00 |
76.86 |
27.29 |
51 |
HIV1ID0352
|
Gene silencing |
siRNA antisense sequence |
"M98" |
20 |
|
AACCATCCCCTAGCTTTCTT |
5139-5158 |
sor |
GAAAGCUAGGGGAUGGUUUU |
5730-5749 |
170 |
5.00 |
0.00 |
76.86 |
27.29 |
51 |
HIV1ID0353
|
Gene silencing |
siRNA sense sequence |
"MTAR" |
21 |
|
AGACCAGATATGAGCCTGGTT |
9553-9573 |
3'LTR |
AGACCAGAUCUGAGCCUGGGA |
10965-10985 |
109 |
0.00 |
0.00 |
90.45 |
30.15 |
51 |
HIV1ID0354
|
Gene silencing |
siRNA antisense sequence |
"MTAR" |
21 |
|
CCAGGCTCATATCTGGTCTTT |
9551-9571 |
3'LTR |
UUAGACCAGAUCUGAGCCUGG |
10965-10983 |
109 |
0.00 |
20.00 |
89.95 |
36.65 |
51 |
HIV1ID0355
|
Gene silencing |
siRNA sense sequence |
"TAR" |
21 |
|
AGACCAGATCTGAGCCTGGTT |
9553-9573 |
3'LTR |
AGACCAGAUCUGAGCCUGGGA |
10965-10985 |
109 |
0.00 |
0.00 |
90.45 |
30.15 |
51 |
HIV1ID0356
|
Gene silencing |
siRNA antisense sequence |
"TAR" |
21 |
|
CCAGGCTCAGATCTGGTCTTT |
9551-9571 |
3'LTR |
UUAGACCAGAUCUGAGCCUGG |
10965-10983 |
109 |
0.00 |
20.00 |
89.95 |
36.65 |
51 |
HIV1ID0357
|
Gene silencing |
siRNA sense sequence |
"nef" |
21 |
|
GTGCCTGGCTAGAAGCACATT |
8960-8980 |
27k protein |
GUGCCUGGCUAGAAGCACAAG |
10198-10218 |
164 |
4.76 |
20.00 |
85.55 |
36.77 |
51 |
HIV1ID0358
|
Gene silencing |
siRNA antisense sequence |
"nef" |
21 |
|
TGTGCTTCTAGCCAGGCACTT |
8968-8988 |
27k protein |
CUAGAAGCACAAGAGGAGGAG |
10206-10226 |
164 |
4.76 |
0.00 |
81.62 |
28.79 |
51 |
HIV1ID0359
|
Gene silencing |
siRNA sense sequence |
"M388" |
21 |
|
GACTTCAAGGGAGATGGCATT |
2916-2936 |
pol |
GACUUCAGGAAGUAUACUGCA |
3495-3515 |
170 |
28.57 |
60.00 |
84.30 |
57.63 |
51 |
HIV1ID0360
|
Gene silencing |
siRNA antisense sequence |
"M388" |
21 |
|
TGCCATCTCCCTTGAAGTCTT |
5050-5070 |
pol |
AGAUGGCAGGUGAUGAUUGUG |
5641-5661 |
170 |
38.10 |
20.00 |
96.97 |
51.69 |
51 |
HIV1ID0361
|
Gene silencing |
siRNA sense sequence |
"G388" |
21 |
|
GACTTCAAGGAAGATGGCATT |
2916-2936 |
pol |
GACUUCAGGAAGUAUACUGCA |
3495-3515 |
170 |
28.57 |
60.00 |
84.30 |
57.63 |
51 |
HIV1ID0362
|
Gene silencing |
siRNA antisense sequence |
"G388" |
21 |
|
TGCCATCTTCCTTGAAGTCTT |
5050-5070 |
pol |
AGAUGGCAGGUGAUGAUUGUG |
5641-5661 |
170 |
38.10 |
20.00 |
96.97 |
51.69 |
51 |
HIV1ID0363
|
Gene silencing |
siRNA sense sequence |
"T441" |
21 |
|
CTTGGCACTAGCAGCATTATT |
5481-5501 |
sor |
CUUGGCACUAGCAGCAUUAAU |
6081-6101 |
170 |
9.52 |
0.00 |
81.23 |
30.25 |
51 |
HIV1ID0364
|
Gene silencing |
siRNA antisense sequence |
"T441" |
21 |
|
TAATGCTGCTAGTGCCAAGTT |
5479-5499 |
sor |
UACUUGGCACUAGCAGCAUUA |
6079-6099 |
170 |
14.29 |
0.00 |
84.75 |
33.01 |
51 |
HIV1ID0365
|
Gene silencing |
siRNA sense sequence |
"T283" |
21 |
|
AGCACACAAGTAGACCCTGTT |
5323-5343 |
sor |
AGCACACAAGUAGACCCUGAA |
5920-5940 |
170 |
23.81 |
20.00 |
86.55 |
43.45 |
51 |
HIV1ID0366
|
Gene silencing |
siRNA antisense sequence |
"T283" |
21 |
|
CAGGGTCTACTTGTGTGCTTT |
5321-5341 |
sor |
AUAGCACACAAGUAGACCCUG |
5918-5938 |
170 |
28.57 |
40.00 |
89.12 |
52.56 |
51 |
HIV1ID0367
|
Gene silencing |
siRNA sense sequence |
"T98" |
21 |
|
GGAAAGCTAAGGACTGGTTTT |
5138-5158 |
sor |
GGAAAGCUAGGGGAUGGUUUU |
5729-5749 |
170 |
4.76 |
0.00 |
76.17 |
26.98 |
51 |
HIV1ID0368
|
Gene silencing |
siRNA antisense sequence |
"T98" |
21 |
|
AACCAGTCCTTAGCTTTCCTT |
3470-3490 |
pol |
AGAGAUUCUAAAAGAACCAGU |
4050-4070 |
170 |
9.52 |
20.00 |
87.51 |
39.01 |
51 |
HIV1ID0369
|
Gene silencing |
siRNA sense sequence |
"RT2" |
21 |
|
TGAGACACCAGGGATTAGATT |
2960-2980 |
pol |
UGAGACACCAGGGAUUAGAUA |
3539-3559 |
170 |
33.33 |
40.00 |
91.84 |
55.06 |
52 |
HIV1ID0370
|
Gene silencing |
siRNA antisense sequence |
"RT2" |
21 |
|
TCTAATCCCTGGTGTCTCATT |
2958-2978 |
pol |
AAUGAGACACCAGGGAUUAGA |
3537-3557 |
170 |
38.10 |
20.00 |
91.89 |
50.00 |
52 |
HIV1ID0371
|
Gene silencing |
siRNA sense sequence |
"RT1" |
21 |
|
GAGACACCAGGGATTAGATTT |
2961-2981 |
pol |
GAGACACCAGGGAUUAGAUAU |
3540-3560 |
170 |
33.33 |
20.00 |
91.18 |
48.17 |
52 |
HIV1ID0372
|
Gene silencing |
siRNA antisense sequence |
"RT1" |
21 |
|
ATCTAATCCCTGGTGTCTCTT |
2959-2979 |
pol |
AUGAGACACCAGGGAUUAGAU |
3538-3558 |
170 |
33.33 |
20.00 |
91.84 |
48.39 |
52 |
HIV1ID0373
|
Gene silencing |
siRNA sense sequence |
"tat3" |
21 |
|
GAAGCGGAGACAGCGACGATT |
5980-6000 |
tat |
GAAGCGGAGACAGCGACGAAG |
6630-6642 |
170 |
30.77 |
0.00 |
86.82 |
39.20 |
52 |
HIV1ID0374
|
Gene silencing |
siRNA antisense sequence |
"tat3" |
21 |
|
TCGTCGCTGTCTCCGCTTCTT |
5978-5998 |
tat |
AAGAAGCGGAGACAGCGACGA |
6628-6642 |
170 |
33.33 |
0.00 |
88.50 |
40.61 |
52 |
HIV1ID0375
|
Gene silencing |
siRNA sense sequence |
"tat2" |
21 |
|
CTAGAGCCCTGGAAGCATCTT |
5852-5872 |
tat |
CUAGAGCCCUGGAAGCAUCCA |
6487-6507 |
170 |
38.10 |
60.00 |
88.84 |
62.31 |
52 |
HIV1ID0376
|
Gene silencing |
siRNA antisense sequence |
"tat2" |
21 |
|
GATGCTTCCAGGGCTCTAGTT |
5850-5870 |
tat |
GACUAGAGCCCUGGAAGCAUC |
6485-6505 |
170 |
33.33 |
60.00 |
86.06 |
59.80 |
52 |
HIV1ID0377
|
Gene silencing |
siRNA sense sequence |
"tat1" |
21 |
|
TATGGCAGGAAGAAGCGGATT |
5969-5989 |
tat |
UAUGGCAGGAAGAAGCGGAGA |
6619-6639 |
170 |
52.38 |
20.00 |
95.09 |
55.82 |
52 |
HIV1ID0378
|
Gene silencing |
siRNA antisense sequence |
"tat1" |
21 |
|
TCCGCTTCTTCCTGCCATATT |
5967-5987 |
tat |
CCUAUGGCAGGAAGAAGCGGA |
6617-6637 |
170 |
52.38 |
20.00 |
96.72 |
56.37 |
52 |
HIV1ID0379
|
Gene silencing |
shRNA sequence |
"Tat" |
49 |
|
TATGGCAGGAAGAAGCGGATTCAAGAGATC(...) |
5969-5987 |
tat |
UAUGGCAGGAAGAAGCGGA |
6619-6637 |
170 |
57.89 |
20.00 |
97.61 |
58.50 |
53 |
HIV1ID0380
|
Gene expression |
siRNA sense sequence |
"p24" |
21 |
|
GATTGTACTGAGAGACAGGCT |
2062-2082 |
gag |
GAUUGUACUGAGAGACAGGCU |
2499-2511 |
170 |
7.69 |
20.00 |
91.92 |
39.87 |
54 |